Propinquity output documentation. The top-level docs are here

When propinquity is run using the rebuild_from_latest.sh shell script, this directory will be populated with the log files from the build. These include the concanated log of otcetera outputs and:

StepStandard outputStandard error
make cleanlog-of-make-clean.txtlog-of-make-clean-err.txt
input cleaninglog-of-input-cleaning.txtlog-of-input-cleaning-err.txt
supertreelog-of-supertree.txtlog-of-supertree-err.txt
annotationslog-of-annotations.txtlog-of-annotations-err.txt
assessmentslog-of-assessments.txtlog-of-assessments-err.txt
html generationlog-of-html.txtlog-of-html-err.txt
top level script outputcomplete_log.txtcomplete_log_error.txt