2019-10-09 09:47:51,693 INFO  [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/labelled_supertree/labelled_supertree.tre"...
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./bin/document_outputs.py:55: DeprecationWarning: The SafeConfigParser class has been renamed to ConfigParser in Python 3.2. This alias will be removed in future versions. Use ConfigParser directly instead.
  parsed_config = configparser.SafeConfigParser()
./bin/document_outputs.py:40: DeprecationWarning: The SafeConfigParser class has been renamed to ConfigParser in Python 3.2. This alias will be removed in future versions. Use ConfigParser directly instead.
  p = configparser.SafeConfigParser()