+ rm -f ../opentree5.0/logs/myeasylog.log
+ echo cleaning the inputs...
+ echo -n inputcleaning 
+ date
+ rm -f ../opentree5.0/logs/log-of-input-cleaning.txt
+ rm -f ../opentree5.0/logs/log-of-input-cleaning-err.txt
+ make ../opentree5.0/exemplified_phylo/taxonomy.tre
+ echo creating the supertree...
+ echo -n supertree 
+ date
+ rm -f ../opentree5.0/logs/log-of-supertree.txt
+ rm -f ../opentree5.0/logs/log-of-supertree-err.txt
+ make ../opentree5.0/labelled_supertree/labelled_supertree.tre
+ echo annotating the supertree...
+ echo -n annotating 
+ date
+ rm -f ../opentree5.0/logs/log-of-annotations.txt
+ rm -f ../opentree5.0/logs/log-of-annotations-err.txt
+ make ../opentree5.0/annotated_supertree/annotations.json
+ echo make extra...
+ echo -n extra 
+ date
+ rm -f ../opentree5.0/logs/log-of-extra.txt
+ rm -f ../opentree5.0/logs/log-of-extra-err.txt
+ make extra
+ echo running the assessments of the tree...
+ echo -n assessments 
+ date
+ rm -f ../opentree5.0/logs/log-of-assessments.txt
+ rm -f ../opentree5.0/logs/log-of-assessments-err.txt
+ make ../opentree5.0/assessments/summary.json
+ echo -n makecheck 
+ date
+ make check
+ echo -n html 
+ date
+ echo creating documentation of the outputs...
+ rm -f ../opentree5.0/logs/log-of-html.txt
+ rm -f ../opentree5.0/logs/log-of-html-err.txt
+ make html
+ exit