./bin/collections_shard_shas.sh > ../opentree5.0/.tmp_collections_git_shas.txt
if ! diff ../opentree5.0/phylo_snapshot/git_shas.txt ../opentree5.0/.tmp_collections_git_shas.txt >/dev/null 2>&1 ; then mv ../opentree5.0/.tmp_collections_git_shas.txt ../opentree5.0/phylo_snapshot/collections_git_shas.txt ; else rm ../opentree5.0/.tmp_collections_git_shas.txt ; fi
bin/document_outputs.py --config=../opentree5.0/config ../opentree5.0
make[1]: Entering directory '/home/mholder/Documents/projects/ot/full-propinquity'
make[1]: '../opentree5.0/assessments/summary.json' is up to date.
make[1]: Leaving directory '/home/mholder/Documents/projects/ot/full-propinquity'
make[1]: Entering directory '/home/mholder/Documents/projects/ot/full-propinquity'
make[1]: '../opentree5.0/phylo_snapshot/collections_git_shas.txt' is up to date.
make[1]: Leaving directory '/home/mholder/Documents/projects/ot/full-propinquity'
make[1]: Entering directory '/home/mholder/Documents/projects/ot/full-propinquity'
otc-degree-distribution \
	../opentree5.0/exemplified_phylo/taxonomy.tre \
	> ../opentree5.0/exemplified_phylo/pruned_taxonomy_degree_distribution.txt
make[1]: Leaving directory '/home/mholder/Documents/projects/ot/full-propinquity'
make[1]: Entering directory '/home/mholder/Documents/projects/ot/full-propinquity'
rm -f ../opentree5.0/subproblem_solutions/.solution-degree-distributions.txt
for n in $(cat ../opentree5.0/subproblems/subproblem-ids.txt) ; do \
	echo ${n} >> ../opentree5.0/subproblem_solutions/.solution-degree-distributions.txt ;\
	otc-degree-distribution \
		../opentree5.0/subproblem_solutions/${n} \
		>> ../opentree5.0/subproblem_solutions/.solution-degree-distributions.txt 2>/dev/null; \
done ;
mv ../opentree5.0/subproblem_solutions/.solution-degree-distributions.txt \
   ../opentree5.0/subproblem_solutions/solution-degree-distributions.txt
make[1]: Leaving directory '/home/mholder/Documents/projects/ot/full-propinquity'
make[1]: Entering directory '/home/mholder/Documents/projects/ot/full-propinquity'
otc-degree-distribution \
	../opentree5.0/labelled_supertree/labelled_supertree.tre \
	> ../opentree5.0/labelled_supertree/labelled_supertree_out_degree_distribution.txt
make[1]: Leaving directory '/home/mholder/Documents/projects/ot/full-propinquity'
make[1]: Entering directory '/home/mholder/Documents/projects/ot/full-propinquity'
make[1]: '../opentree5.0/labelled_supertree/labelled_supertree_ottnames.tre' is up to date.
make[1]: Leaving directory '/home/mholder/Documents/projects/ot/full-propinquity'
Documentation created
See ../opentree5.0/index.html and linked files for documentation of output