bin/config_checker.py --config=../opentree5.0/config --property=synthesis.collections > ../opentree5.0/phylo_input/.raw_collections.txt if ! diff \ ../opentree5.0/phylo_input/collections.txt \ ../opentree5.0/phylo_input/.raw_collections.txt 2>/dev/null ; \ then \ mv ../opentree5.0/phylo_input/.raw_collections.txt \ ../opentree5.0/phylo_input/collections.txt ; \ else rm ../opentree5.0/phylo_input/.raw_collections.txt ; \ fi bin/reaggregate-synth-collections.sh ../opentree5.0/phylo_input/.raw_rank_collection.json /home/mholder/Documents/projects/ot/peyotl/scripts/concatenate_collections.py /home/mholder/Documents/projects/ot/phylesystem/shards/collections-1/collections-by-owner//opentreeoflife/plants.json /home/mholder/Documents/projects/ot/phylesystem/shards/collections-1/collections-by-owner//opentreeoflife/metazoa.json /home/mholder/Documents/projects/ot/phylesystem/shards/collections-1/collections-by-owner//opentreeoflife/fungi.json /home/mholder/Documents/projects/ot/phylesystem/shards/collections-1/collections-by-owner//opentreeoflife/safe-microbes.json /home/mholder/Documents/projects/ot/phylesystem/shards/collections-1/collections-by-owner//kcranston/barnacles.json --output=../opentree5.0/phylo_input/.raw_rank_collection.json if ! diff \ ../opentree5.0/phylo_input/rank_collection.json \ ../opentree5.0/phylo_input/.raw_rank_collection.json \ 2>/dev/null ; \ then \ mv ../opentree5.0/phylo_input/.raw_rank_collection.json \ ../opentree5.0/phylo_input/rank_collection.json ; \ else \ rm ../opentree5.0/phylo_input/.raw_rank_collection.json ; \ fi /home/mholder/Documents/projects/ot/peyotl/scripts/collection_export.py \ --export=studyID_treeID \ ../opentree5.0/phylo_input/rank_collection.json \ >../opentree5.0/phylo_input/study_tree_pairs.txt sed -e "s:\(.*\):../opentree5.0/cleaned_phylo/\1.tre:" ../opentree5.0/phylo_input/study_tree_pairs.txt > ../opentree5.0/exemplified_phylo/args.txt if ! diff /home/mholder/Documents/projects/ot/ott/ott2.9draft12//version.txt ../opentree5.0/cleaned_ott/ott_version.txt >/dev/null 2>&1 ; then cp /home/mholder/Documents/projects/ot/ott/ott2.9draft12//version.txt ../opentree5.0/cleaned_ott/ott_version.txt ; fi ./bin/config_checker.py --config=../opentree5.0/config --property=taxonomy.cleaning_flags > ../opentree5.0/cleaned_ott/.raw_cleaning_flags.txt if ! diff ../opentree5.0/cleaned_ott/.raw_cleaning_flags.txt ../opentree5.0/cleaned_ott/cleaning_flags.txt 2>/dev/null; then mv ../opentree5.0/cleaned_ott/.raw_cleaning_flags.txt ../opentree5.0/cleaned_ott/cleaning_flags.txt ; fi ./bin/config_checker.py --config=../opentree5.0/config --property=synthesis.root_ott_id > ../opentree5.0/cleaned_ott/.raw_root_ott_id.txt if ! diff ../opentree5.0/cleaned_ott/.raw_root_ott_id.txt ../opentree5.0/cleaned_ott/root_ott_id.txt 2>/dev/null; then mv ../opentree5.0/cleaned_ott/.raw_root_ott_id.txt ../opentree5.0/cleaned_ott/root_ott_id.txt ; fi /home/mholder/Documents/projects/ot/peyotl/scripts/ott/suppress_by_flag.py \ --ott-dir=/home/mholder/Documents/projects/ot/ott/ott2.9draft12/ \ --output=../opentree5.0/cleaned_ott/cleaned_ott.tre \ --log=../opentree5.0/cleaned_ott/cleaned_ott.json \ --flags="major_rank_conflict,major_rank_conflict_inherited,environmental,unclassified_inherited,unclassified,viral,barren,not_otu,incertae_sedis,incertae_sedis_inherited,extinct_inherited,extinct,hidden,unplaced,unplaced_inherited,was_container,inconsistent,hybrid,merged" \ --root="93302" if ! diff ../opentree5.0/cleaned_ott/cleaning_flags.txt ../opentree5.0/cleaned_phylo/cleaning_flags.txt >/dev/null 2>&1 && \ ! diff ../opentree5.0/cleaned_ott/root_ott_id.txt ../opentree5.0/cleaned_phylo/root_ott_id.txt >/dev/null 2>&1 ; \ then \ sed -e "s:\(.*\):../opentree5.0/phylo_snapshot/\1.json:" < ../opentree5.0/phylo_input/study_tree_pairs.txt > ../opentree5.0/cleaned_phylo/x ; \ bin/convert-space-to-newline ../opentree5.0/cleaned_phylo/x > ../opentree5.0/cleaned_phylo/needs_updating.txt ;\ rm -f ../opentree5.0/cleaned_phylo/x ;\ else \ ./bin/write-needs-updating ../opentree5.0/cleaned_phylo $(sed -e 's:\(.*\):phylo_snapshot/\1.json:' < ../opentree5.0/phylo_input/study_tree_pairs.txt) > ../opentree5.0/cleaned_phylo/needs_updating.txt ;\ fi cp ../opentree5.0/cleaned_ott/cleaning_flags.txt ../opentree5.0/cleaned_phylo/cleaning_flags.txt cp ../opentree5.0/cleaned_ott/root_ott_id.txt ../opentree5.0/cleaned_phylo/root_ott_id.txt ./bin/shard_shas.sh > ../opentree5.0/.tmp_git_shas.txt if ! diff ../opentree5.0/phylo_snapshot/git_shas.txt ../opentree5.0/.tmp_git_shas.txt >/dev/null 2>&1 ; then mv ../opentree5.0/.tmp_git_shas.txt ../opentree5.0/phylo_snapshot/git_shas.txt ; else rm ../opentree5.0/.tmp_git_shas.txt ; fi /home/mholder/Documents/projects/ot/peyotl/scripts/phylesystem/export_studies_from_collection.py \ --phylesystem-par=/home/mholder/Documents/projects/ot/phylesystem/shards \ --output-dir=../opentree5.0/phylo_snapshot \ ../opentree5.0/phylo_input/rank_collection.json \ -v 2>&1 | tee ../opentree5.0/phylo_snapshot/stdouterr.txt export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_27/pg_2827/pg_2827.json" "../opentree5.0/phylo_snapshot/pg_2827@tree6577.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_61/pg_761/pg_761.json" "../opentree5.0/phylo_snapshot/pg_761@tree1415.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_77/pg_77/pg_77.json" "../opentree5.0/phylo_snapshot/pg_77@tree5878.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_54/pg_754/pg_754.json" "../opentree5.0/phylo_snapshot/pg_754@tree1392.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_30/pg_330/pg_330.json" "../opentree5.0/phylo_snapshot/pg_330@tree325.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_31/pg_1131/pg_1131.json" "../opentree5.0/phylo_snapshot/pg_1131@tree2265.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_08/pg_2608/pg_2608.json" "../opentree5.0/phylo_snapshot/pg_2608@tree6288.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_39/pg_2539/pg_2539.json" "../opentree5.0/phylo_snapshot/pg_2539@tree6294.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_45/pg_2645/pg_2645.json" "../opentree5.0/phylo_snapshot/pg_2645@tree6165.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_44/pg_2644/pg_2644.json" "../opentree5.0/phylo_snapshot/pg_2644@tree6164.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_42/pg_2642/pg_2642.json" "../opentree5.0/phylo_snapshot/pg_2642@tree6161.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_26/pg_2626/pg_2626.json" "../opentree5.0/phylo_snapshot/pg_2626@tree6142.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_32/pg_332/pg_332.json" "../opentree5.0/phylo_snapshot/pg_332@tree333.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_32/pg_2832/pg_2832.json" "../opentree5.0/phylo_snapshot/pg_2832@tree6586.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_66/pg_1866/pg_1866.json" "../opentree5.0/phylo_snapshot/pg_1866@tree3765.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_59/pg_59/pg_59.json" "../opentree5.0/phylo_snapshot/pg_59@tree5731.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_04/pg_704/pg_704.json" "../opentree5.0/phylo_snapshot/pg_704@tree1266.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_38/pg_2638/pg_2638.json" "../opentree5.0/phylo_snapshot/pg_2638@tree6157.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_74/pg_1974/pg_1974.json" "../opentree5.0/phylo_snapshot/pg_1974@tree4038.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_74/pg_1974/pg_1974.json" "../opentree5.0/phylo_snapshot/pg_1974@tree4039.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_01/pg_2901/pg_2901.json" "../opentree5.0/phylo_snapshot/pg_2901@tree6721.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_06/pg_2906/pg_2906.json" "../opentree5.0/phylo_snapshot/pg_2906@tree6730.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_24/pg_1524/pg_1524.json" "../opentree5.0/phylo_snapshot/pg_1524@tree3046.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_14/pg_1414/pg_1414.json" "../opentree5.0/phylo_snapshot/pg_1414@tree2837.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_11/pg_1411/pg_1411.json" "../opentree5.0/phylo_snapshot/pg_1411@tree5110.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_09/pg_1409/pg_1409.json" "../opentree5.0/phylo_snapshot/pg_1409@tree2822.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_08/pg_1408/pg_1408.json" "../opentree5.0/phylo_snapshot/pg_1408@tree2821.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_07/pg_1407/pg_1407.json" "../opentree5.0/phylo_snapshot/pg_1407@tree2818.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_01/pg_1401/pg_1401.json" "../opentree5.0/phylo_snapshot/pg_1401@tree2812.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_91/pg_1391/pg_1391.json" "../opentree5.0/phylo_snapshot/pg_1391@tree2795.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_34/pg_1434/pg_1434.json" "../opentree5.0/phylo_snapshot/pg_1434@tree2876.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_33/pg_2633/pg_2633.json" "../opentree5.0/phylo_snapshot/pg_2633@tree6153.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_39/pg_1539/pg_1539.json" "../opentree5.0/phylo_snapshot/pg_1539@tree3088.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_34/pg_2634/pg_2634.json" "../opentree5.0/phylo_snapshot/pg_2634@tree6154.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_22/pg_1022/pg_1022.json" "../opentree5.0/phylo_snapshot/pg_1022@tree1967.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_62/pg_562/pg_562.json" "../opentree5.0/phylo_snapshot/pg_562@tree817.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_88/pg_588/pg_588.json" "../opentree5.0/phylo_snapshot/pg_588@tree878.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_48/pg_2048/pg_2048.json" "../opentree5.0/phylo_snapshot/pg_2048@tree4220.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_37/pg_1137/pg_1137.json" "../opentree5.0/phylo_snapshot/pg_1137@tree2295.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_62/pg_62/pg_62.json" "../opentree5.0/phylo_snapshot/pg_62@tree2878.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_41/pg_2841/pg_2841.json" "../opentree5.0/phylo_snapshot/pg_2841@tree6597.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_85/pg_2085/pg_2085.json" "../opentree5.0/phylo_snapshot/pg_2085@tree4317.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_80/pg_180/pg_180.json" "../opentree5.0/phylo_snapshot/pg_180@tree794.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_76/pg_576/pg_576.json" "../opentree5.0/phylo_snapshot/pg_576@tree849.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_81/pg_581/pg_581.json" "../opentree5.0/phylo_snapshot/pg_581@tree859.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_82/pg_582/pg_582.json" "../opentree5.0/phylo_snapshot/pg_582@tree862.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_98/pg_598/pg_598.json" "../opentree5.0/phylo_snapshot/pg_598@tree926.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_99/pg_599/pg_599.json" "../opentree5.0/phylo_snapshot/pg_599@tree927.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_03/pg_603/pg_603.json" "../opentree5.0/phylo_snapshot/pg_603@tree940.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_21/pg_721/pg_721.json" "../opentree5.0/phylo_snapshot/pg_721@tree1298.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_23/pg_723/pg_723.json" "../opentree5.0/phylo_snapshot/pg_723@tree1300.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_21/pg_921/pg_921.json" "../opentree5.0/phylo_snapshot/pg_921@tree4103.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_61/pg_61/pg_61.json" "../opentree5.0/phylo_snapshot/pg_61@tree816.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_73/pg_573/pg_573.json" "../opentree5.0/phylo_snapshot/pg_573@tree839.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_66/pg_566/pg_566.json" "../opentree5.0/phylo_snapshot/pg_566@tree832.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_22/pg_1522/pg_1522.json" "../opentree5.0/phylo_snapshot/pg_1522@tree3044.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_70/pg_1570/pg_1570.json" "../opentree5.0/phylo_snapshot/pg_1570@tree3142.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_83/pg_1583/pg_1583.json" "../opentree5.0/phylo_snapshot/pg_1583@tree3194.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_72/pg_1572/pg_1572.json" "../opentree5.0/phylo_snapshot/pg_1572@tree3145.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_09/pg_2909/pg_2909.json" "../opentree5.0/phylo_snapshot/pg_2909@tree6735.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_43/pg_43/pg_43.json" "../opentree5.0/phylo_snapshot/pg_43@tree3862.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_38/pg_38/pg_38.json" "../opentree5.0/phylo_snapshot/pg_38@tree1750.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_78/pg_2878/pg_2878.json" "../opentree5.0/phylo_snapshot/pg_2878@tree6673.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_24/pg_2624/pg_2624.json" "../opentree5.0/phylo_snapshot/pg_2624@tree6139.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_28/pg_2128/pg_2128.json" "../opentree5.0/phylo_snapshot/pg_2128@tree4437.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_02/pg_1102/pg_1102.json" "../opentree5.0/phylo_snapshot/pg_1102@tree2177.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_29/pg_1129/pg_1129.json" "../opentree5.0/phylo_snapshot/pg_1129@tree2251.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_09/pg_1109/pg_1109.json" "../opentree5.0/phylo_snapshot/pg_1109@tree2201.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_04/pg_2004/pg_2004.json" "../opentree5.0/phylo_snapshot/pg_2004@tree4118.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_53/pg_53/pg_53.json" "../opentree5.0/phylo_snapshot/pg_53@tree1280.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_18/pg_1118/pg_1118.json" "../opentree5.0/phylo_snapshot/pg_1118@tree2226.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_69/pg_2669/pg_2669.json" "../opentree5.0/phylo_snapshot/pg_2669@tree6213.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_32/pg_2032/pg_2032.json" "../opentree5.0/phylo_snapshot/pg_2032@tree5922.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_01/pg_1901/pg_1901.json" "../opentree5.0/phylo_snapshot/pg_1901@tree3877.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_13/pg_713/pg_713.json" "../opentree5.0/phylo_snapshot/pg_713@tree1287.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_12/pg_2912/pg_2912.json" "../opentree5.0/phylo_snapshot/pg_2912@tree6740.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_59/pg_259/pg_259.json" "../opentree5.0/phylo_snapshot/pg_259@tree142.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_64/pg_264/pg_264.json" "../opentree5.0/phylo_snapshot/pg_264@tree150.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_67/pg_267/pg_267.json" "../opentree5.0/phylo_snapshot/pg_267@tree161.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_77/pg_2077/pg_2077.json" "../opentree5.0/phylo_snapshot/pg_2077@tree4291.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_93/pg_293/pg_293.json" "../opentree5.0/phylo_snapshot/pg_293@tree201.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_97/pg_197/pg_197.json" "../opentree5.0/phylo_snapshot/pg_197@tree784.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_95/pg_595/pg_595.json" "../opentree5.0/phylo_snapshot/pg_595@tree896.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_31/pg_131/pg_131.json" "../opentree5.0/phylo_snapshot/pg_131@tree6236.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_89/pg_2689/pg_2689.json" "../opentree5.0/phylo_snapshot/pg_2689@tree6241.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_97/pg_597/pg_597.json" "../opentree5.0/phylo_snapshot/pg_597@tree906.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_01/pg_2001/pg_2001.json" "../opentree5.0/phylo_snapshot/pg_2001@tree4100.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_06/pg_606/pg_606.json" "../opentree5.0/phylo_snapshot/pg_606@tree5290.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_70/pg_270/pg_270.json" "../opentree5.0/phylo_snapshot/pg_270@tree159.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_96/pg_596/pg_596.json" "../opentree5.0/phylo_snapshot/pg_596@tree901.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_94/pg_294/pg_294.json" "../opentree5.0/phylo_snapshot/pg_294@tree202.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_92/pg_292/pg_292.json" "../opentree5.0/phylo_snapshot/pg_292@tree199.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_58/pg_58/pg_58.json" "../opentree5.0/phylo_snapshot/pg_58@tree775.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_48/pg_548/pg_548.json" "../opentree5.0/phylo_snapshot/pg_548@tree798.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_55/pg_2055/pg_2055.json" "../opentree5.0/phylo_snapshot/pg_2055@tree4234.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_57/pg_2057/pg_2057.json" "../opentree5.0/phylo_snapshot/pg_2057@tree4240.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_27/pg_2127/pg_2127.json" "../opentree5.0/phylo_snapshot/pg_2127@tree4426.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_94/pg_594/pg_594.json" "../opentree5.0/phylo_snapshot/pg_594@tree890.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_61/pg_261/pg_261.json" "../opentree5.0/phylo_snapshot/pg_261@tree145.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_57/pg_57/pg_57.json" "../opentree5.0/phylo_snapshot/pg_57@tree777.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_87/pg_1087/pg_1087.json" "../opentree5.0/phylo_snapshot/pg_1087@tree2114.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_87/pg_1087/pg_1087.json" "../opentree5.0/phylo_snapshot/pg_1087@tree2115.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_90/pg_2690/pg_2690.json" "../opentree5.0/phylo_snapshot/pg_2690@tree6243.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_45/pg_2045/pg_2045.json" "../opentree5.0/phylo_snapshot/pg_2045@tree4213.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_05/pg_605/pg_605.json" "../opentree5.0/phylo_snapshot/pg_605@tree947.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_71/pg_271/pg_271.json" "../opentree5.0/phylo_snapshot/pg_271@tree5017.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_61/pg_2661/pg_2661.json" "../opentree5.0/phylo_snapshot/pg_2661@tree6198.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_52/pg_2052/pg_2052.json" "../opentree5.0/phylo_snapshot/pg_2052@tree4228.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_03/pg_1103/pg_1103.json" "../opentree5.0/phylo_snapshot/pg_1103@tree2178.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_14/pg_14/pg_14.json" "../opentree5.0/phylo_snapshot/pg_14@tree12.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_98/pg_2598/pg_2598.json" "../opentree5.0/phylo_snapshot/pg_2598@tree6020.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_00/pg_2000/pg_2000.json" "../opentree5.0/phylo_snapshot/pg_2000@tree4098.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_20/pg_20/pg_20.json" "../opentree5.0/phylo_snapshot/pg_20@tree2162.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_01/pg_1101/pg_1101.json" "../opentree5.0/phylo_snapshot/pg_1101@tree2172.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_65/pg_2565/pg_2565.json" "../opentree5.0/phylo_snapshot/pg_2565@tree5708.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_94/pg_1094/pg_1094.json" "../opentree5.0/phylo_snapshot/pg_1094@tree2138.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_41/pg_2641/pg_2641.json" "../opentree5.0/phylo_snapshot/pg_2641@tree6160.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_99/pg_99/pg_99.json" "../opentree5.0/phylo_snapshot/pg_99@tree5885.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_93/pg_93/pg_93.json" "../opentree5.0/phylo_snapshot/pg_93@tree1411.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_98/pg_898/pg_898.json" "../opentree5.0/phylo_snapshot/pg_898@tree1732.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_16/pg_216/pg_216.json" "../opentree5.0/phylo_snapshot/pg_216@tree5865.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_01/pg_901/pg_901.json" "../opentree5.0/phylo_snapshot/pg_901@tree1740.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_30/pg_2830/pg_2830.json" "../opentree5.0/phylo_snapshot/pg_2830@tree6583.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_31/pg_2831/pg_2831.json" "../opentree5.0/phylo_snapshot/pg_2831@tree6584.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_19/pg_719/pg_719.json" "../opentree5.0/phylo_snapshot/pg_719@tree1296.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_75/pg_1975/pg_1975.json" "../opentree5.0/phylo_snapshot/pg_1975@tree4041.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_21/pg_1821/pg_1821.json" "../opentree5.0/phylo_snapshot/pg_1821@tree3678.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_81/pg_1581/pg_1581.json" "../opentree5.0/phylo_snapshot/pg_1581@tree3188.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_75/pg_1575/pg_1575.json" "../opentree5.0/phylo_snapshot/pg_1575@tree3164.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_73/pg_1573/pg_1573.json" "../opentree5.0/phylo_snapshot/pg_1573@tree3144.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_34/pg_934/pg_934.json" "../opentree5.0/phylo_snapshot/pg_934@tree1832.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_00/pg_200/pg_200.json" "../opentree5.0/phylo_snapshot/pg_200@tree6585.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_52/pg_152/pg_152.json" "../opentree5.0/phylo_snapshot/pg_152@tree5743.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_53/pg_53/pg_53.json" "../opentree5.0/phylo_snapshot/pg_53@tree1281.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_76/pg_2076/pg_2076.json" "../opentree5.0/phylo_snapshot/pg_2076@tree4282.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_50/pg_50/pg_50.json" "../opentree5.0/phylo_snapshot/pg_50@tree1397.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_80/pg_80/pg_80.json" "../opentree5.0/phylo_snapshot/pg_80@tree5881.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_24/pg_424/pg_424.json" "../opentree5.0/phylo_snapshot/pg_424@tree532.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_82/pg_82/pg_82.json" "../opentree5.0/phylo_snapshot/pg_82@tree5792.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_62/pg_1962/pg_1962.json" "../opentree5.0/phylo_snapshot/pg_1962@tree6580.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_15/pg_915/pg_915.json" "../opentree5.0/phylo_snapshot/pg_915@tree1802.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_32/pg_32/pg_32.json" "../opentree5.0/phylo_snapshot/pg_32@tree1775.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_15/pg_915/pg_915.json" "../opentree5.0/phylo_snapshot/pg_915@tree1803.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_25/pg_2625/pg_2625.json" "../opentree5.0/phylo_snapshot/pg_2625@tree6140.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_30/pg_1130/pg_1130.json" "../opentree5.0/phylo_snapshot/pg_1130@tree2258.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_47/pg_2047/pg_2047.json" "../opentree5.0/phylo_snapshot/pg_2047@tree4217.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_86/pg_386/pg_386.json" "../opentree5.0/phylo_snapshot/pg_386@tree459.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_39/pg_139/pg_139.json" "../opentree5.0/phylo_snapshot/pg_139@tree5860.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_26/pg_126/pg_126.json" "../opentree5.0/phylo_snapshot/pg_126@tree2233.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_36/pg_136/pg_136.json" "../opentree5.0/phylo_snapshot/pg_136@tree5857.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_44/pg_1944/pg_1944.json" "../opentree5.0/phylo_snapshot/pg_1944@tree3959.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_28/pg_2828/pg_2828.json" "../opentree5.0/phylo_snapshot/pg_2828@tree6578.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_42/pg_142/pg_142.json" "../opentree5.0/phylo_snapshot/pg_142@tree38.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_21/pg_21/pg_21.json" "../opentree5.0/phylo_snapshot/pg_21@tree37.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_75/pg_75/pg_75.json" "../opentree5.0/phylo_snapshot/pg_75@tree1743.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_41/pg_41/pg_41.json" "../opentree5.0/phylo_snapshot/pg_41@tree1396.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_44/pg_2044/pg_2044.json" "../opentree5.0/phylo_snapshot/pg_2044@tree4212.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_16/pg_1916/pg_1916.json" "../opentree5.0/phylo_snapshot/pg_1916@tree3902.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_26/pg_926/pg_926.json" "../opentree5.0/phylo_snapshot/pg_926@tree1825.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_33/pg_1133/pg_1133.json" "../opentree5.0/phylo_snapshot/pg_1133@tree5647.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_25/pg_625/pg_625.json" "../opentree5.0/phylo_snapshot/pg_625@tree1016.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_42/pg_1842/pg_1842.json" "../opentree5.0/phylo_snapshot/pg_1842@tree3724.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_88/pg_288/pg_288.json" "../opentree5.0/phylo_snapshot/pg_288@tree5028.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_85/pg_385/pg_385.json" "../opentree5.0/phylo_snapshot/pg_385@tree458.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_43/pg_1843/pg_1843.json" "../opentree5.0/phylo_snapshot/pg_1843@tree3725.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_58/pg_1858/pg_1858.json" "../opentree5.0/phylo_snapshot/pg_1858@tree3754.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_94/pg_394/pg_394.json" "../opentree5.0/phylo_snapshot/pg_394@tree483.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_52/pg_52/pg_52.json" "../opentree5.0/phylo_snapshot/pg_52@tree463.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_12/pg_2712/pg_2712.json" "../opentree5.0/phylo_snapshot/pg_2712@tree6296.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_10/pg_2610/pg_2610.json" "../opentree5.0/phylo_snapshot/pg_2610@tree6117.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_50/pg_650/pg_650.json" "../opentree5.0/phylo_snapshot/pg_650@tree1147.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_75/pg_275/pg_275.json" "../opentree5.0/phylo_snapshot/pg_275@tree167.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_37/pg_37/pg_37.json" "../opentree5.0/phylo_snapshot/pg_37@tree5871.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_73/pg_73/pg_73.json" "../opentree5.0/phylo_snapshot/pg_73@tree5787.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_88/pg_88/pg_88.json" "../opentree5.0/phylo_snapshot/pg_88@tree5848.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_72/pg_72/pg_72.json" "../opentree5.0/phylo_snapshot/pg_72@tree801.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_83/pg_283/pg_283.json" "../opentree5.0/phylo_snapshot/pg_283@tree184.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_30/pg_30/pg_30.json" "../opentree5.0/phylo_snapshot/pg_30@tree2281.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_43/pg_1443/pg_1443.json" "../opentree5.0/phylo_snapshot/pg_1443@tree2917.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_40/pg_2140/pg_2140.json" "../opentree5.0/phylo_snapshot/pg_2140@tree4483.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_20/pg_2820/pg_2820.json" "../opentree5.0/phylo_snapshot/pg_2820@tree6566.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_83/pg_1483/pg_1483.json" "../opentree5.0/phylo_snapshot/pg_1483@tree2983.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_78/pg_1478/pg_1478.json" "../opentree5.0/phylo_snapshot/pg_1478@tree2974.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_74/pg_1474/pg_1474.json" "../opentree5.0/phylo_snapshot/pg_1474@tree2969.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_73/pg_1473/pg_1473.json" "../opentree5.0/phylo_snapshot/pg_1473@tree2967.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_53/pg_1453/pg_1453.json" "../opentree5.0/phylo_snapshot/pg_1453@tree2932.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_50/pg_1450/pg_1450.json" "../opentree5.0/phylo_snapshot/pg_1450@tree2926.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_84/pg_1384/pg_1384.json" "../opentree5.0/phylo_snapshot/pg_1384@tree2766.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_82/pg_1382/pg_1382.json" "../opentree5.0/phylo_snapshot/pg_1382@tree2763.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_18/pg_1318/pg_1318.json" "../opentree5.0/phylo_snapshot/pg_1318@tree2634.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_12/pg_1312/pg_1312.json" "../opentree5.0/phylo_snapshot/pg_1312@tree2628.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_65/pg_2165/pg_2165.json" "../opentree5.0/phylo_snapshot/pg_2165@tree4564.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_18/pg_1518/pg_1518.json" "../opentree5.0/phylo_snapshot/pg_1518@tree6333.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_98/pg_2898/pg_2898.json" "../opentree5.0/phylo_snapshot/pg_2898@tree6713.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_96/pg_2896/pg_2896.json" "../opentree5.0/phylo_snapshot/pg_2896@tree6709.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_64/pg_1264/pg_1264.json" "../opentree5.0/phylo_snapshot/pg_1264@tree2544.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_56/pg_56/pg_56.json" "../opentree5.0/phylo_snapshot/pg_56@tree5821.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_48/pg_2648/pg_2648.json" "../opentree5.0/phylo_snapshot/pg_2648@tree6171.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_64/pg_2564/pg_2564.json" "../opentree5.0/phylo_snapshot/pg_2564@tree5699.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_81/pg_81/pg_81.json" "../opentree5.0/phylo_snapshot/pg_81@tree5863.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_96/pg_1996/pg_1996.json" "../opentree5.0/phylo_snapshot/pg_1996@tree4089.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_46/pg_1446/pg_1446.json" "../opentree5.0/phylo_snapshot/pg_1446@tree2921.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_39/pg_2039/pg_2039.json" "../opentree5.0/phylo_snapshot/pg_2039@tree4198.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_42/pg_2042/pg_2042.json" "../opentree5.0/phylo_snapshot/pg_2042@tree4202.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_42/pg_1942/pg_1942.json" "../opentree5.0/phylo_snapshot/pg_1942@tree3962.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_68/pg_1868/pg_1868.json" "../opentree5.0/phylo_snapshot/pg_1868@tree3767.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_67/pg_1567/pg_1567.json" "../opentree5.0/phylo_snapshot/pg_1567@tree3137.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_44/pg_244/pg_244.json" "../opentree5.0/phylo_snapshot/pg_244@tree3855.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_79/pg_2879/pg_2879.json" "../opentree5.0/phylo_snapshot/pg_2879@tree6674.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_12/pg_412/pg_412.json" "../opentree5.0/phylo_snapshot/pg_412@tree2166.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_25/pg_225/pg_225.json" "../opentree5.0/phylo_snapshot/pg_225@tree5991.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_67/pg_1867/pg_1867.json" "../opentree5.0/phylo_snapshot/pg_1867@tree3766.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_78/pg_1278/pg_1278.json" "../opentree5.0/phylo_snapshot/pg_1278@tree2572.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_68/pg_1268/pg_1268.json" "../opentree5.0/phylo_snapshot/pg_1268@tree2560.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_87/pg_787/pg_787.json" "../opentree5.0/phylo_snapshot/pg_787@tree1489.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_46/pg_2046/pg_2046.json" "../opentree5.0/phylo_snapshot/pg_2046@tree5928.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_19/ot_119/ot_119.json" "../opentree5.0/phylo_snapshot/ot_119@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_18/ot_118/ot_118.json" "../opentree5.0/phylo_snapshot/ot_118@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_77/pg_2577/pg_2577.json" "../opentree5.0/phylo_snapshot/pg_2577@tree5980.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_66/pg_2866/pg_2866.json" "../opentree5.0/phylo_snapshot/pg_2866@tree6656.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_60/pg_2860/pg_2860.json" "../opentree5.0/phylo_snapshot/pg_2860@tree6646.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_16/ot_116/ot_116.json" "../opentree5.0/phylo_snapshot/ot_116@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_21/ot_121/ot_121.json" "../opentree5.0/phylo_snapshot/ot_121@tree7.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_76/pg_2876/pg_2876.json" "../opentree5.0/phylo_snapshot/pg_2876@tree6670.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_26/pg_2926/pg_2926.json" "../opentree5.0/phylo_snapshot/pg_2926@tree6757.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_64/pg_1764/pg_1764.json" "../opentree5.0/phylo_snapshot/pg_1764@tree6299.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_37/ot_137/ot_137.json" "../opentree5.0/phylo_snapshot/ot_137@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_40/ot_140/ot_140.json" "../opentree5.0/phylo_snapshot/ot_140@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_98/pg_2798/pg_2798.json" "../opentree5.0/phylo_snapshot/pg_2798@tree6497.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_04/ot_104/ot_104.json" "../opentree5.0/phylo_snapshot/ot_104@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_42/ot_142/ot_142.json" "../opentree5.0/phylo_snapshot/ot_142@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_38/ot_138/ot_138.json" "../opentree5.0/phylo_snapshot/ot_138@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_64/pg_2864/pg_2864.json" "../opentree5.0/phylo_snapshot/pg_2864@tree6651.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_39/ot_139/ot_139.json" "../opentree5.0/phylo_snapshot/ot_139@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_72/pg_1872/pg_1872.json" "../opentree5.0/phylo_snapshot/pg_1872@tree3780.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_25/ot_125/ot_125.json" "../opentree5.0/phylo_snapshot/ot_125@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_69/pg_2869/pg_2869.json" "../opentree5.0/phylo_snapshot/pg_2869@tree6661.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_12/ot_112/ot_112.json" "../opentree5.0/phylo_snapshot/ot_112@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_53/pg_2853/pg_2853.json" "../opentree5.0/phylo_snapshot/pg_2853@tree6624.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_23/ot_123/ot_123.json" "../opentree5.0/phylo_snapshot/ot_123@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_72/pg_2872/pg_2872.json" "../opentree5.0/phylo_snapshot/pg_2872@tree6665.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_22/ot_122/ot_122.json" "../opentree5.0/phylo_snapshot/ot_122@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_24/ot_124/ot_124.json" "../opentree5.0/phylo_snapshot/ot_124@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_29/ot_129/ot_129.json" "../opentree5.0/phylo_snapshot/ot_129@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_47/ot_147/ot_147.json" "../opentree5.0/phylo_snapshot/ot_147@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_48/ot_148/ot_148.json" "../opentree5.0/phylo_snapshot/ot_148@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_49/ot_149/ot_149.json" "../opentree5.0/phylo_snapshot/ot_149@tree4.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_50/ot_150/ot_150.json" "../opentree5.0/phylo_snapshot/ot_150@tree3.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_56/ot_156/ot_156.json" "../opentree5.0/phylo_snapshot/ot_156@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_53/ot_153/ot_153.json" "../opentree5.0/phylo_snapshot/ot_153@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_51/ot_151/ot_151.json" "../opentree5.0/phylo_snapshot/ot_151@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_54/ot_154/ot_154.json" "../opentree5.0/phylo_snapshot/ot_154@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_55/ot_155/ot_155.json" "../opentree5.0/phylo_snapshot/ot_155@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_52/ot_152/ot_152.json" "../opentree5.0/phylo_snapshot/ot_152@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_57/ot_157/ot_157.json" "../opentree5.0/phylo_snapshot/ot_157@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_58/ot_158/ot_158.json" "../opentree5.0/phylo_snapshot/ot_158@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_59/ot_159/ot_159.json" "../opentree5.0/phylo_snapshot/ot_159@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_44/ot_144/ot_144.json" "../opentree5.0/phylo_snapshot/ot_144@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_36/ot_136/ot_136.json" "../opentree5.0/phylo_snapshot/ot_136@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_57/pg_2857/pg_2857.json" "../opentree5.0/phylo_snapshot/pg_2857@tree6628.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_87/pg_1887/pg_1887.json" "../opentree5.0/phylo_snapshot/pg_1887@tree6629.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_50/pg_2850/pg_2850.json" "../opentree5.0/phylo_snapshot/pg_2850@tree6620.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_44/pg_2444/pg_2444.json" "../opentree5.0/phylo_snapshot/pg_2444@tree6526.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_70/pg_2870/pg_2870.json" "../opentree5.0/phylo_snapshot/pg_2870@tree6662.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_71/pg_2871/pg_2871.json" "../opentree5.0/phylo_snapshot/pg_2871@tree6663.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_66/ot_166/ot_166.json" "../opentree5.0/phylo_snapshot/ot_166@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_61/ot_161/ot_161.json" "../opentree5.0/phylo_snapshot/ot_161@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_60/ot_160/ot_160.json" "../opentree5.0/phylo_snapshot/ot_160@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_79/pg_1979/pg_1979.json" "../opentree5.0/phylo_snapshot/pg_1979@tree6300.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_05/pg_2805/pg_2805.json" "../opentree5.0/phylo_snapshot/pg_2805@tree6512.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_62/ot_162/ot_162.json" "../opentree5.0/phylo_snapshot/ot_162@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_64/ot_164/ot_164.json" "../opentree5.0/phylo_snapshot/ot_164@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_65/ot_165/ot_165.json" "../opentree5.0/phylo_snapshot/ot_165@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_67/ot_167/ot_167.json" "../opentree5.0/phylo_snapshot/ot_167@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_70/ot_170/ot_170.json" "../opentree5.0/phylo_snapshot/ot_170@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_02/ot_102/ot_102.json" "../opentree5.0/phylo_snapshot/ot_102@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_74/ot_174/ot_174.json" "../opentree5.0/phylo_snapshot/ot_174@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_10/ot_110/ot_110.json" "../opentree5.0/phylo_snapshot/ot_110@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_45/pg_2845/pg_2845.json" "../opentree5.0/phylo_snapshot/pg_2845@tree6606.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_72/ot_172/ot_172.json" "../opentree5.0/phylo_snapshot/ot_172@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_54/pg_2454/pg_2454.json" "../opentree5.0/phylo_snapshot/pg_2454@tree5247.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_72/ot_172/ot_172.json" "../opentree5.0/phylo_snapshot/ot_172@tree2.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_73/ot_173/ot_173.json" "../opentree5.0/phylo_snapshot/ot_173@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_00/pg_2600/pg_2600.json" "../opentree5.0/phylo_snapshot/pg_2600@tree6022.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_76/ot_176/ot_176.json" "../opentree5.0/phylo_snapshot/ot_176@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_77/ot_177/ot_177.json" "../opentree5.0/phylo_snapshot/ot_177@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_78/ot_178/ot_178.json" "../opentree5.0/phylo_snapshot/ot_178@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_91/pg_2591/pg_2591.json" "../opentree5.0/phylo_snapshot/pg_2591@tree6024.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_99/pg_2599/pg_2599.json" "../opentree5.0/phylo_snapshot/pg_2599@tree6021.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_66/pg_1966/pg_1966.json" "../opentree5.0/phylo_snapshot/pg_1966@tree4019.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_75/pg_2875/pg_2875.json" "../opentree5.0/phylo_snapshot/pg_2875@tree6668.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_07/pg_2707/pg_2707.json" "../opentree5.0/phylo_snapshot/pg_2707@tree6281.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_04/pg_2404/pg_2404.json" "../opentree5.0/phylo_snapshot/pg_2404@tree5068.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_20/pg_420/pg_420.json" "../opentree5.0/phylo_snapshot/pg_420@tree522.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_61/pg_2861/pg_2861.json" "../opentree5.0/phylo_snapshot/pg_2861@tree6647.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_59/pg_2859/pg_2859.json" "../opentree5.0/phylo_snapshot/pg_2859@tree6643.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_97/pg_1797/pg_1797.json" "../opentree5.0/phylo_snapshot/pg_1797@tree3635.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_44/pg_2844/pg_2844.json" "../opentree5.0/phylo_snapshot/pg_2844@tree6605.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_43/pg_2843/pg_2843.json" "../opentree5.0/phylo_snapshot/pg_2843@tree6604.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_25/pg_2825/pg_2825.json" "../opentree5.0/phylo_snapshot/pg_2825@tree6572.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_95/pg_2695/pg_2695.json" "../opentree5.0/phylo_snapshot/pg_2695@tree6250.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_56/pg_2656/pg_2656.json" "../opentree5.0/phylo_snapshot/pg_2656@tree6185.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_00/pg_1600/pg_1600.json" "../opentree5.0/phylo_snapshot/pg_1600@tree3231.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_88/pg_2688/pg_2688.json" "../opentree5.0/phylo_snapshot/pg_2688@tree6240.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_59/pg_2359/pg_2359.json" "../opentree5.0/phylo_snapshot/pg_2359@tree4962.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_87/pg_2687/pg_2687.json" "../opentree5.0/phylo_snapshot/pg_2687@tree6239.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_91/pg_2691/pg_2691.json" "../opentree5.0/phylo_snapshot/pg_2691@tree6244.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_85/pg_2685/pg_2685.json" "../opentree5.0/phylo_snapshot/pg_2685@tree6235.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_68/ot_168/ot_168.json" "../opentree5.0/phylo_snapshot/ot_168@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_34/pg_1634/pg_1634.json" "../opentree5.0/phylo_snapshot/pg_1634@tree3303.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_27/pg_1927/pg_1927.json" "../opentree5.0/phylo_snapshot/pg_1927@tree6215.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_87/pg_2587/pg_2587.json" "../opentree5.0/phylo_snapshot/pg_2587@tree5998.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_81/pg_1981/pg_1981.json" "../opentree5.0/phylo_snapshot/pg_1981@tree4052.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_84/pg_2684/pg_2684.json" "../opentree5.0/phylo_snapshot/pg_2684@tree6644.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_28/pg_1428/pg_1428.json" "../opentree5.0/phylo_snapshot/pg_1428@tree2855.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_46/pg_1646/pg_1646.json" "../opentree5.0/phylo_snapshot/pg_1646@tree6231.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_33/pg_2833/pg_2833.json" "../opentree5.0/phylo_snapshot/pg_2833@tree6588.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_34/pg_2834/pg_2834.json" "../opentree5.0/phylo_snapshot/pg_2834@tree6589.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_16/pg_2816/pg_2816.json" "../opentree5.0/phylo_snapshot/pg_2816@tree6556.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_41/pg_2741/pg_2741.json" "../opentree5.0/phylo_snapshot/pg_2741@tree6645.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_89/pg_2589/pg_2589.json" "../opentree5.0/phylo_snapshot/pg_2589@tree6001.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_55/pg_2655/pg_2655.json" "../opentree5.0/phylo_snapshot/pg_2655@tree6181.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_97/pg_1997/pg_1997.json" "../opentree5.0/phylo_snapshot/pg_1997@tree6183.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_54/pg_2654/pg_2654.json" "../opentree5.0/phylo_snapshot/pg_2654@tree6179.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_85/pg_2585/pg_2585.json" "../opentree5.0/phylo_snapshot/pg_2585@tree5994.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_53/pg_2653/pg_2653.json" "../opentree5.0/phylo_snapshot/pg_2653@tree6178.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_57/pg_2657/pg_2657.json" "../opentree5.0/phylo_snapshot/pg_2657@tree6191.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_51/pg_2551/pg_2551.json" "../opentree5.0/phylo_snapshot/pg_2551@tree6180.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_76/pg_2576/pg_2576.json" "../opentree5.0/phylo_snapshot/pg_2576@tree5975.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_70/pg_1870/pg_1870.json" "../opentree5.0/phylo_snapshot/pg_1870@tree3769.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_59/pg_2659/pg_2659.json" "../opentree5.0/phylo_snapshot/pg_2659@tree6195.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_81/ot_181/ot_181.json" "../opentree5.0/phylo_snapshot/ot_181@tree2.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_81/pg_2881/pg_2881.json" "../opentree5.0/phylo_snapshot/pg_2881@tree6680.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_43/pg_2143/pg_2143.json" "../opentree5.0/phylo_snapshot/pg_2143@tree4505.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_98/pg_2098/pg_2098.json" "../opentree5.0/phylo_snapshot/pg_2098@tree6487.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_51/pg_2851/pg_2851.json" "../opentree5.0/phylo_snapshot/pg_2851@tree6621.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_15/pg_2415/pg_2415.json" "../opentree5.0/phylo_snapshot/pg_2415@tree5096.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_23/pg_423/pg_423.json" "../opentree5.0/phylo_snapshot/pg_423@tree2857.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_73/pg_2573/pg_2573.json" "../opentree5.0/phylo_snapshot/pg_2573@tree5959.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_11/pg_2711/pg_2711.json" "../opentree5.0/phylo_snapshot/pg_2711@tree6295.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_60/pg_2460/pg_2460.json" "../opentree5.0/phylo_snapshot/pg_2460@tree5285.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_52/pg_1252/pg_1252.json" "../opentree5.0/phylo_snapshot/pg_1252@tree2661.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_36/pg_1336/pg_1336.json" "../opentree5.0/phylo_snapshot/pg_1336@tree2660.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_48/pg_1948/pg_1948.json" "../opentree5.0/phylo_snapshot/pg_1948@tree6513.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_96/pg_1796/pg_1796.json" "../opentree5.0/phylo_snapshot/pg_1796@tree6514.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_43/pg_2243/pg_2243.json" "../opentree5.0/phylo_snapshot/pg_2243@tree6515.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_70/pg_2670/pg_2670.json" "../opentree5.0/phylo_snapshot/pg_2670@tree6214.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_71/pg_2671/pg_2671.json" "../opentree5.0/phylo_snapshot/pg_2671@tree6216.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_73/pg_2673/pg_2673.json" "../opentree5.0/phylo_snapshot/pg_2673@tree6219.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_74/pg_2674/pg_2674.json" "../opentree5.0/phylo_snapshot/pg_2674@tree6220.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_75/pg_2675/pg_2675.json" "../opentree5.0/phylo_snapshot/pg_2675@tree6221.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_76/pg_2676/pg_2676.json" "../opentree5.0/phylo_snapshot/pg_2676@tree6222.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_77/pg_2677/pg_2677.json" "../opentree5.0/phylo_snapshot/pg_2677@tree6223.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_82/pg_2682/pg_2682.json" "../opentree5.0/phylo_snapshot/pg_2682@tree6227.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_83/pg_2683/pg_2683.json" "../opentree5.0/phylo_snapshot/pg_2683@tree6228.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_07/pg_2807/pg_2807.json" "../opentree5.0/phylo_snapshot/pg_2807@tree6519.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_08/pg_2808/pg_2808.json" "../opentree5.0/phylo_snapshot/pg_2808@tree6522.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_67/pg_2667/pg_2667.json" "../opentree5.0/phylo_snapshot/pg_2667@tree6211.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_38/pg_2838/pg_2838.json" "../opentree5.0/phylo_snapshot/pg_2838@tree6594.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_87/pg_2087/pg_2087.json" "../opentree5.0/phylo_snapshot/pg_2087@tree4323.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_88/pg_1988/pg_1988.json" "../opentree5.0/phylo_snapshot/pg_1988@tree4074.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_93/pg_2593/pg_2593.json" "../opentree5.0/phylo_snapshot/pg_2593@tree6247.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_14/pg_2614/pg_2614.json" "../opentree5.0/phylo_snapshot/pg_2614@tree6121.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_28/pg_2628/pg_2628.json" "../opentree5.0/phylo_snapshot/pg_2628@tree6143.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_23/pg_2323/pg_2323.json" "../opentree5.0/phylo_snapshot/pg_2323@tree6537.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_40/pg_1940/pg_1940.json" "../opentree5.0/phylo_snapshot/pg_1940@tree3943.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_37/pg_437/pg_437.json" "../opentree5.0/phylo_snapshot/pg_437@tree6242.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_94/pg_2594/pg_2594.json" "../opentree5.0/phylo_snapshot/pg_2594@tree6014.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_57/pg_2357/pg_2357.json" "../opentree5.0/phylo_snapshot/pg_2357@tree6538.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_51/pg_251/pg_251.json" "../opentree5.0/phylo_snapshot/pg_251@tree134.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_49/pg_1849/pg_1849.json" "../opentree5.0/phylo_snapshot/pg_1849@tree3731.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_11/pg_2811/pg_2811.json" "../opentree5.0/phylo_snapshot/pg_2811@tree6533.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_04/pg_2604/pg_2604.json" "../opentree5.0/phylo_snapshot/pg_2604@tree6043.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_63/pg_1563/pg_1563.json" "../opentree5.0/phylo_snapshot/pg_1563@tree6170.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_64/pg_2664/pg_2664.json" "../opentree5.0/phylo_snapshot/pg_2664@tree6201.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_76/pg_1776/pg_1776.json" "../opentree5.0/phylo_snapshot/pg_1776@tree3581.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_85/ot_185/ot_185.json" "../opentree5.0/phylo_snapshot/ot_185@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_37/pg_1337/pg_1337.json" "../opentree5.0/phylo_snapshot/pg_1337@tree6167.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_29/pg_2629/pg_2629.json" "../opentree5.0/phylo_snapshot/pg_2629@tree6162.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_56/pg_2156/pg_2156.json" "../opentree5.0/phylo_snapshot/pg_2156@tree5953.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_38/pg_1338/pg_1338.json" "../opentree5.0/phylo_snapshot/pg_1338@tree2666.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_22/pg_2422/pg_2422.json" "../opentree5.0/phylo_snapshot/pg_2422@tree5117.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_82/ot_182/ot_182.json" "../opentree5.0/phylo_snapshot/ot_182@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_83/ot_183/ot_183.json" "../opentree5.0/phylo_snapshot/ot_183@tree2.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_61/pg_2061/pg_2061.json" "../opentree5.0/phylo_snapshot/pg_2061@tree4245.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_68/pg_2068/pg_2068.json" "../opentree5.0/phylo_snapshot/pg_2068@tree6488.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_05/pg_2405/pg_2405.json" "../opentree5.0/phylo_snapshot/pg_2405@tree6669.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_66/pg_1366/pg_1366.json" "../opentree5.0/phylo_snapshot/pg_1366@tree6166.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_92/pg_2092/pg_2092.json" "../opentree5.0/phylo_snapshot/pg_2092@tree4335.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_44/pg_2544/pg_2544.json" "../opentree5.0/phylo_snapshot/pg_2544@tree6482.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_96/pg_2696/pg_2696.json" "../opentree5.0/phylo_snapshot/pg_2696@tree6249.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_09/pg_2709/pg_2709.json" "../opentree5.0/phylo_snapshot/pg_2709@tree6290.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_42/pg_2842/pg_2842.json" "../opentree5.0/phylo_snapshot/pg_2842@tree6603.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_08/pg_2708/pg_2708.json" "../opentree5.0/phylo_snapshot/pg_2708@tree6289.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_43/pg_1343/pg_1343.json" "../opentree5.0/phylo_snapshot/pg_1343@tree6255.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_88/pg_1788/pg_1788.json" "../opentree5.0/phylo_snapshot/pg_1788@tree6534.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_86/pg_1786/pg_1786.json" "../opentree5.0/phylo_snapshot/pg_1786@tree6257.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_78/pg_2678/pg_2678.json" "../opentree5.0/phylo_snapshot/pg_2678@tree6224.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_21/pg_421/pg_421.json" "../opentree5.0/phylo_snapshot/pg_421@tree523.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_61/pg_1761/pg_1761.json" "../opentree5.0/phylo_snapshot/pg_1761@tree6151.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_10/pg_2710/pg_2710.json" "../opentree5.0/phylo_snapshot/pg_2710@tree6291.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_35/pg_335/pg_335.json" "../opentree5.0/phylo_snapshot/pg_335@tree360.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_38/pg_338/pg_338.json" "../opentree5.0/phylo_snapshot/pg_338@tree5527.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_39/pg_339/pg_339.json" "../opentree5.0/phylo_snapshot/pg_339@tree365.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_40/pg_340/pg_340.json" "../opentree5.0/phylo_snapshot/pg_340@tree5532.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_43/pg_343/pg_343.json" "../opentree5.0/phylo_snapshot/pg_343@tree5534.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_48/pg_348/pg_348.json" "../opentree5.0/phylo_snapshot/pg_348@tree381.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_49/pg_349/pg_349.json" "../opentree5.0/phylo_snapshot/pg_349@tree5539.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_53/pg_353/pg_353.json" "../opentree5.0/phylo_snapshot/pg_353@tree5542.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_58/pg_358/pg_358.json" "../opentree5.0/phylo_snapshot/pg_358@tree406.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_61/pg_361/pg_361.json" "../opentree5.0/phylo_snapshot/pg_361@tree5551.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_66/pg_366/pg_366.json" "../opentree5.0/phylo_snapshot/pg_366@tree5552.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_67/pg_367/pg_367.json" "../opentree5.0/phylo_snapshot/pg_367@tree418.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_68/pg_368/pg_368.json" "../opentree5.0/phylo_snapshot/pg_368@tree5553.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_69/pg_369/pg_369.json" "../opentree5.0/phylo_snapshot/pg_369@tree5554.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_70/pg_370/pg_370.json" "../opentree5.0/phylo_snapshot/pg_370@tree426.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_72/pg_372/pg_372.json" "../opentree5.0/phylo_snapshot/pg_372@tree431.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_73/pg_373/pg_373.json" "../opentree5.0/phylo_snapshot/pg_373@tree432.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_74/pg_374/pg_374.json" "../opentree5.0/phylo_snapshot/pg_374@tree433.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_75/pg_375/pg_375.json" "../opentree5.0/phylo_snapshot/pg_375@tree436.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_76/pg_376/pg_376.json" "../opentree5.0/phylo_snapshot/pg_376@tree438.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_80/pg_380/pg_380.json" "../opentree5.0/phylo_snapshot/pg_380@tree5560.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_82/pg_382/pg_382.json" "../opentree5.0/phylo_snapshot/pg_382@tree449.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_87/pg_387/pg_387.json" "../opentree5.0/phylo_snapshot/pg_387@tree5562.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_88/pg_388/pg_388.json" "../opentree5.0/phylo_snapshot/pg_388@tree469.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_89/pg_389/pg_389.json" "../opentree5.0/phylo_snapshot/pg_389@tree470.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_93/pg_393/pg_393.json" "../opentree5.0/phylo_snapshot/pg_393@tree482.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_97/pg_397/pg_397.json" "../opentree5.0/phylo_snapshot/pg_397@tree494.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_99/pg_399/pg_399.json" "../opentree5.0/phylo_snapshot/pg_399@tree5565.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_00/pg_400/pg_400.json" "../opentree5.0/phylo_snapshot/pg_400@tree497.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_02/pg_402/pg_402.json" "../opentree5.0/phylo_snapshot/pg_402@tree5570.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_03/pg_403/pg_403.json" "../opentree5.0/phylo_snapshot/pg_403@tree503.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_04/pg_404/pg_404.json" "../opentree5.0/phylo_snapshot/pg_404@tree506.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_05/pg_405/pg_405.json" "../opentree5.0/phylo_snapshot/pg_405@tree507.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_07/pg_407/pg_407.json" "../opentree5.0/phylo_snapshot/pg_407@tree513.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_08/pg_408/pg_408.json" "../opentree5.0/phylo_snapshot/pg_408@tree5571.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_11/pg_411/pg_411.json" "../opentree5.0/phylo_snapshot/pg_411@tree518.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_14/pg_414/pg_414.json" "../opentree5.0/phylo_snapshot/pg_414@tree519.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_15/pg_415/pg_415.json" "../opentree5.0/phylo_snapshot/pg_415@tree5572.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_30/pg_430/pg_430.json" "../opentree5.0/phylo_snapshot/pg_430@tree541.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_41/pg_441/pg_441.json" "../opentree5.0/phylo_snapshot/pg_441@tree5575.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_44/pg_444/pg_444.json" "../opentree5.0/phylo_snapshot/pg_444@tree564.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_46/pg_446/pg_446.json" "../opentree5.0/phylo_snapshot/pg_446@tree565.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_47/pg_447/pg_447.json" "../opentree5.0/phylo_snapshot/pg_447@tree5576.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_48/pg_448/pg_448.json" "../opentree5.0/phylo_snapshot/pg_448@tree5577.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_49/pg_449/pg_449.json" "../opentree5.0/phylo_snapshot/pg_449@tree570.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_50/pg_450/pg_450.json" "../opentree5.0/phylo_snapshot/pg_450@tree574.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_43/pg_443/pg_443.json" "../opentree5.0/phylo_snapshot/pg_443@tree562.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_63/pg_463/pg_463.json" "../opentree5.0/phylo_snapshot/pg_463@tree604.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_70/pg_470/pg_470.json" "../opentree5.0/phylo_snapshot/pg_470@tree615.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_71/pg_471/pg_471.json" "../opentree5.0/phylo_snapshot/pg_471@tree617.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_73/pg_473/pg_473.json" "../opentree5.0/phylo_snapshot/pg_473@tree623.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_74/pg_474/pg_474.json" "../opentree5.0/phylo_snapshot/pg_474@tree627.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_75/pg_475/pg_475.json" "../opentree5.0/phylo_snapshot/pg_475@tree5594.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_77/pg_477/pg_477.json" "../opentree5.0/phylo_snapshot/pg_477@tree633.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_79/pg_479/pg_479.json" "../opentree5.0/phylo_snapshot/pg_479@tree636.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_80/pg_480/pg_480.json" "../opentree5.0/phylo_snapshot/pg_480@tree637.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_81/pg_481/pg_481.json" "../opentree5.0/phylo_snapshot/pg_481@tree644.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_82/pg_482/pg_482.json" "../opentree5.0/phylo_snapshot/pg_482@tree5595.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_83/pg_483/pg_483.json" "../opentree5.0/phylo_snapshot/pg_483@tree647.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_85/pg_485/pg_485.json" "../opentree5.0/phylo_snapshot/pg_485@tree651.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_48/pg_2448/pg_2448.json" "../opentree5.0/phylo_snapshot/pg_2448@tree5223.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_39/pg_2739/pg_2739.json" "../opentree5.0/phylo_snapshot/pg_2739@tree6601.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_54/pg_2554/pg_2554.json" "../opentree5.0/phylo_snapshot/pg_2554@tree5580.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_15/pg_2715/pg_2715.json" "../opentree5.0/phylo_snapshot/pg_2715@tree6308.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_53/pg_2753/pg_2753.json" "../opentree5.0/phylo_snapshot/pg_2753@tree6360.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_63/pg_263/pg_263.json" "../opentree5.0/phylo_snapshot/pg_263@tree149.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_42/pg_2542/pg_2542.json" "../opentree5.0/phylo_snapshot/pg_2542@tree5590.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_37/pg_2737/pg_2737.json" "../opentree5.0/phylo_snapshot/pg_2737@tree6322.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_38/pg_2738/pg_2738.json" "../opentree5.0/phylo_snapshot/pg_2738@tree6323.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_38/pg_2738/pg_2738.json" "../opentree5.0/phylo_snapshot/pg_2738@tree6324.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_92/pg_2892/pg_2892.json" "../opentree5.0/phylo_snapshot/pg_2892@tree6700.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_91/pg_2891/pg_2891.json" "../opentree5.0/phylo_snapshot/pg_2891@tree6699.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_06/ot_106/ot_106.json" "../opentree5.0/phylo_snapshot/ot_106@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_31/pg_2731/pg_2731.json" "../opentree5.0/phylo_snapshot/pg_2731@tree6428.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_13/pg_2713/pg_2713.json" "../opentree5.0/phylo_snapshot/pg_2713@tree6309.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_42/pg_2742/pg_2742.json" "../opentree5.0/phylo_snapshot/pg_2742@tree6342.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_57/pg_2757/pg_2757.json" "../opentree5.0/phylo_snapshot/pg_2757@tree6369.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_53/pg_2553/pg_2553.json" "../opentree5.0/phylo_snapshot/pg_2553@tree5579.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_56/pg_2556/pg_2556.json" "../opentree5.0/phylo_snapshot/pg_2556@tree5586.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_12/pg_312/pg_312.json" "../opentree5.0/phylo_snapshot/pg_312@tree264.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_13/pg_313/pg_313.json" "../opentree5.0/phylo_snapshot/pg_313@tree6681.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_84/pg_2484/pg_2484.json" "../opentree5.0/phylo_snapshot/pg_2484@tree6607.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_49/pg_2849/pg_2849.json" "../opentree5.0/phylo_snapshot/pg_2849@tree6615.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_22/pg_2822/pg_2822.json" "../opentree5.0/phylo_snapshot/pg_2822@tree6569.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_45/ot_645/ot_645.json" "../opentree5.0/phylo_snapshot/ot_645@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_51/ot_651/ot_651.json" "../opentree5.0/phylo_snapshot/ot_651@tree2.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_19/pg_2919/pg_2919.json" "../opentree5.0/phylo_snapshot/pg_2919@tree6749.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_19/ot_619/ot_619.json" "../opentree5.0/phylo_snapshot/ot_619@tree8.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_75/ot_75/ot_75.json" "../opentree5.0/phylo_snapshot/ot_75@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_98/ot_98/ot_98.json" "../opentree5.0/phylo_snapshot/ot_98@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_32/ot_632/ot_632.json" "../opentree5.0/phylo_snapshot/ot_632@tree2.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_20/ot_620/ot_620.json" "../opentree5.0/phylo_snapshot/ot_620@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_63/ot_163/ot_163.json" "../opentree5.0/phylo_snapshot/ot_163@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_44/ot_644/ot_644.json" "../opentree5.0/phylo_snapshot/ot_644@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_40/ot_640/ot_640.json" "../opentree5.0/phylo_snapshot/ot_640@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_43/ot_643/ot_643.json" "../opentree5.0/phylo_snapshot/ot_643@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_21/pg_2921/pg_2921.json" "../opentree5.0/phylo_snapshot/pg_2921@tree6749.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_23/pg_2923/pg_2923.json" "../opentree5.0/phylo_snapshot/pg_2923@tree6751.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_46/ot_646/ot_646.json" "../opentree5.0/phylo_snapshot/ot_646@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_71/ot_71/ot_71.json" "../opentree5.0/phylo_snapshot/ot_71@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_22/pg_2922/pg_2922.json" "../opentree5.0/phylo_snapshot/pg_2922@tree6752.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_52/ot_652/ot_652.json" "../opentree5.0/phylo_snapshot/ot_652@tree4.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_39/ot_639/ot_639.json" "../opentree5.0/phylo_snapshot/ot_639@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_74/ot_74/ot_74.json" "../opentree5.0/phylo_snapshot/ot_74@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_15/ot_615/ot_615.json" "../opentree5.0/phylo_snapshot/ot_615@Tr76459.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_34/ot_634/ot_634.json" "../opentree5.0/phylo_snapshot/ot_634@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_18/ot_618/ot_618.json" "../opentree5.0/phylo_snapshot/ot_618@tree1.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_17/pg_2917/pg_2917.json" "../opentree5.0/phylo_snapshot/pg_2917@tree6745.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/pg_18/pg_2918/pg_2918.json" "../opentree5.0/phylo_snapshot/pg_2918@tree6755.json" export_studies_from_collection.py: cp "/home/mholder/Documents/projects/ot/phylesystem/shards/phylesystem-1/study/ot_56/ot_656/ot_656.json" "../opentree5.0/phylo_snapshot/ot_656@tree2.json" export_studies_from_collection.py: 511 total trees export_studies_from_collection.py: 511 JSON files copied /home/mholder/Documents/projects/ot/peyotl/scripts/nexson/prune_to_clean_mapped.py \ --ott-dir=/home/mholder/Documents/projects/ot/ott/ott2.9draft12/ \ --input-files-list=../opentree5.0/cleaned_phylo/needs_updating.txt \ --out-dir=../opentree5.0/cleaned_phylo \ --ott-prune-flags="major_rank_conflict,major_rank_conflict_inherited,environmental,unclassified_inherited,unclassified,viral,barren,not_otu,incertae_sedis,incertae_sedis_inherited,extinct_inherited,extinct,hidden,unplaced,unplaced_inherited,was_container,inconsistent,hybrid,merged" \ --root="93302" touch ../opentree5.0/cleaned_phylo/phylo_inputs_cleaned.txt otc-nonterminals-to-exemplars \ -e../opentree5.0/exemplified_phylo \ ../opentree5.0/cleaned_ott/cleaned_ott.tre \ -f../opentree5.0/exemplified_phylo/args.txt \ -j../opentree5.0/exemplified_phylo/exemplified_log.json \ -n../opentree5.0/exemplified_phylo/.nonempty_trees.txt && mv \ ../opentree5.0/exemplified_phylo/.nonempty_trees.txt \ ../opentree5.0/exemplified_phylo/nonempty_trees.txt