./bin/collections_shard_shas.sh > ../opentree8.0/.tmp_collections_git_shas.txt if ! diff ../opentree8.0/phylo_snapshot/git_shas.txt ../opentree8.0/.tmp_collections_git_shas.txt >/dev/null 2>&1 ; then mv ../opentree8.0/.tmp_collections_git_shas.txt ../opentree8.0/phylo_snapshot/collections_git_shas.txt ; else rm ../opentree8.0/.tmp_collections_git_shas.txt ; fi ./bin/document_outputs.py --config=../opentree8.0/config ../opentree8.0 make[1]: `../opentree8.0/assessments/summary.json' is up to date. make[1]: `../opentree8.0/phylo_snapshot/collections_git_shas.txt' is up to date. make[1]: `../opentree8.0/exemplified_phylo/pruned_taxonomy_degree_distribution.txt' is up to date. rm -f ../opentree8.0/subproblem_solutions/.solution-degree-distributions.txt for n in $(cat ../opentree8.0/subproblems/subproblem-ids.txt) ; do \ echo ${n} >> ../opentree8.0/subproblem_solutions/.solution-degree-distributions.txt ;\ otc-degree-distribution \ ../opentree8.0/subproblem_solutions/${n} \ >> ../opentree8.0/subproblem_solutions/.solution-degree-distributions.txt 2>/dev/null; \ done ; mv ../opentree8.0/subproblem_solutions/.solution-degree-distributions.txt \ ../opentree8.0/subproblem_solutions/solution-degree-distributions.txt otc-degree-distribution \ ../opentree8.0/labelled_supertree/labelled_supertree.tre \ > ../opentree8.0/labelled_supertree/labelled_supertree_out_degree_distribution.txt make[1]: `../opentree8.0/labelled_supertree/labelled_supertree_ottnames.tre' is up to date.