Propinquity output documentation. The top-level docs are here.
The cleaned_phylo contains the results of pruning problematically mapped tips from phylogenetic inputs. Full documentation of the procedure and artifacts can be found in the README. Note that trees in this directory may have tips that are mapped to higher (non-terminal) taxa in the OpenTreeTaxonomy.
Next step: The next step in phylogeny processing is to choose exemplars for tips that are mapped to higher taxa (see ../exemplified_phylo/index.html). First, though, we pre-process the Open Tree Taxonomy (see ../cleaned_ott/index.html).
Results: There were 948 nonempty trees after cleaning. The files of interest in this directory are: