2019-10-09 09:45:29,811 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/taxonomy.tre"... 87682 leaves 42149 non-leaf nodes (internals including the root) 15831 non-leaf nodes with out-degree > 1 (internals including the root) 129831 total nodes 2019-10-09 09:45:29,934 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/labelled_supertree/labelled_supertree.tre"... 2019-10-09 09:45:39,545 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_895@tree2.tre"... 2019-10-09 09:45:39,546 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_519@tree2.tre"... 2019-10-09 09:45:39,581 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_519@Tr88326.tre"... 2019-10-09 09:45:39,581 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_896@tree1.tre"... 2019-10-09 09:45:39,583 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1951@tree3975.tre"... 2019-10-09 09:45:39,583 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_930@tree3.tre"... 2019-10-09 09:45:39,585 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1951@tree3974.tre"... 2019-10-09 09:45:39,585 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_932@tree6.tre"... 2019-10-09 09:45:39,585 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_942@Tr94692.tre"... 2019-10-09 09:45:39,586 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_929@tree1.tre"... 2019-10-09 09:45:39,586 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1786@tree6257.tre"... 2019-10-09 09:45:39,587 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_924@Tr97534.tre"... 2019-10-09 09:45:39,588 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1761@tree6151.tre"... 2019-10-09 09:45:39,594 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2445@tree5206.tre"... 2019-10-09 09:45:39,595 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_938@tree1.tre"... 2019-10-09 09:45:39,595 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1785@tree6248.tre"... 2019-10-09 09:45:39,596 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_714@tree2.tre"... 2019-10-09 09:45:39,598 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_944@tree1.tre"... 2019-10-09 09:45:39,599 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1788@tree6534.tre"... 2019-10-09 09:45:39,599 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_957@tree1.tre"... 2019-10-09 09:45:39,599 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_729@Tr90969.tre"... 2019-10-09 09:45:39,600 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_933@tree2.tre"... 2019-10-09 09:45:39,600 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_947@tree1.tre"... 2019-10-09 09:45:39,601 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_954@tree1.tre"... 2019-10-09 09:45:39,601 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_947@tree3.tre"... 2019-10-09 09:45:39,601 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_981@tree1.tre"... 2019-10-09 09:45:39,601 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_947@tree2.tre"... 2019-10-09 09:45:39,602 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_925@tree1.tre"... 2019-10-09 09:45:39,602 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_960@tree1.tre"... 2019-10-09 09:45:39,602 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_956@tree1.tre"... 2019-10-09 09:45:39,602 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_900@tree1.tre"... 2019-10-09 09:45:39,603 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_984@tree1.tre"... 2019-10-09 09:45:39,603 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_985@tree1.tre"... 2019-10-09 09:45:39,604 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_898@tree1.tre"... 2019-10-09 09:45:39,605 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_898@tree3.tre"... 2019-10-09 09:45:39,605 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_898@tree2.tre"... 2019-10-09 09:45:39,606 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_982@tree4.tre"... 2019-10-09 09:45:39,606 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_989@tree1.tre"... 2019-10-09 09:45:39,606 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_990@tree2.tre"... 2019-10-09 09:45:39,606 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_964@tree2.tre"... 2019-10-09 09:45:39,607 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_965@tree1.tre"... 2019-10-09 09:45:39,607 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_523@tree1.tre"... 2019-10-09 09:45:39,608 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_771@tree1.tre"... 2019-10-09 09:45:39,609 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_948@tree2.tre"... 2019-10-09 09:45:39,610 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_951@tree1.tre"... 2019-10-09 09:45:39,612 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_935@tree2.tre"... 2019-10-09 09:45:39,613 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_934@tree1.tre"... 2019-10-09 09:45:39,614 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_613@tree1.tre"... 2019-10-09 09:45:39,615 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_955@tree1.tre"... 2019-10-09 09:45:39,616 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_952@tree1.tre"... 2019-10-09 09:45:39,617 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_987@tree1.tre"... 2019-10-09 09:45:39,617 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_988@tree1.tre"... 2019-10-09 09:45:39,617 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2651@tree6177.tre"... 2019-10-09 09:45:39,642 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1078@tree1.tre"... 2019-10-09 09:45:39,646 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1091@tree1.tre"... 2019-10-09 09:45:39,665 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_793@tree5659.tre"... 2019-10-09 09:45:39,667 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_490@Tr70734.tre"... 2019-10-09 09:45:39,668 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_406@tree509.tre"... 2019-10-09 09:45:39,669 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_401@tree5569.tre"... 2019-10-09 09:45:39,669 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2466@tree5304.tre"... 2019-10-09 09:45:39,671 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_497@Tr4479.tre"... 2019-10-09 09:45:39,671 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_432@tree546.tre"... 2019-10-09 09:45:39,671 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_372@Tr60567.tre"... 2019-10-09 09:45:39,671 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_300@tree217.tre"... 2019-10-09 09:45:39,671 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_408@Tr65494.tre"... 2019-10-09 09:45:39,672 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1753@tree3531.tre"... 2019-10-09 09:45:39,672 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_518@tree733.tre"... 2019-10-09 09:45:39,672 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_531@tree763.tre"... 2019-10-09 09:45:39,672 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_485@tree651.tre"... 2019-10-09 09:45:39,672 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_381@tree448.tre"... 2019-10-09 09:45:39,673 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_393@Tr72538.tre"... 2019-10-09 09:45:39,673 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2486@tree5347.tre"... 2019-10-09 09:45:39,673 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_467@Tr86931.tre"... 2019-10-09 09:45:39,673 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_436@Tr70613.tre"... 2019-10-09 09:45:39,674 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2697@tree6262.tre"... 2019-10-09 09:45:39,674 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2481@tree5339.tre"... 2019-10-09 09:45:39,674 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_374@Tr61050.tre"... 2019-10-09 09:45:39,674 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_235@Tr50560.tre"... 2019-10-09 09:45:39,674 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2467@tree6025.tre"... 2019-10-09 09:45:39,674 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_344@Tr60495.tre"... 2019-10-09 09:45:39,675 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_381@Tr62023.tre"... 2019-10-09 09:45:39,675 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1288@tree2584.tre"... 2019-10-09 09:45:39,676 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_647@tree5621.tre"... 2019-10-09 09:45:39,676 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1618@tree5896.tre"... 2019-10-09 09:45:39,676 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1328@tree5855.tre"... 2019-10-09 09:45:39,676 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2280@tree4827.tre"... 2019-10-09 09:45:39,677 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1420@tree5303.tre"... 2019-10-09 09:45:39,677 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_644@tree1127.tre"... 2019-10-09 09:45:39,677 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_529@tree761.tre"... 2019-10-09 09:45:39,677 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_698@tree5648.tre"... 2019-10-09 09:45:39,679 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_516@tree728.tre"... 2019-10-09 09:45:39,679 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1052@tree5770.tre"... 2019-10-09 09:45:39,679 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1608@tree5892.tre"... 2019-10-09 09:45:39,679 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2518@tree5428.tre"... 2019-10-09 09:45:39,679 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_860@tree1654.tre"... 2019-10-09 09:45:39,679 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_699@tree1258.tre"... 2019-10-09 09:45:39,679 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2276@tree4823.tre"... 2019-10-09 09:45:39,680 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_857@tree1651.tre"... 2019-10-09 09:45:39,680 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_487@tree5599.tre"... 2019-10-09 09:45:39,680 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_492@tree664.tre"... 2019-10-09 09:45:39,680 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1032@tree1981.tre"... 2019-10-09 09:45:39,681 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2314@tree4883.tre"... 2019-10-09 09:45:39,681 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_467@tree5592.tre"... 2019-10-09 09:45:39,682 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1631@tree3297.tre"... 2019-10-09 09:45:39,682 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2238@tree4729.tre"... 2019-10-09 09:45:39,682 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_740@tree1346.tre"... 2019-10-09 09:45:39,683 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_486@Tr2898.tre"... 2019-10-09 09:45:39,683 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_463@tree604.tre"... 2019-10-09 09:45:39,683 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2468@tree5310.tre"... 2019-10-09 09:45:39,684 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_674@tree1207.tre"... 2019-10-09 09:45:39,684 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_443@tree562.tre"... 2019-10-09 09:45:39,684 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2196@tree4650.tre"... 2019-10-09 09:45:39,684 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2206@tree4667.tre"... 2019-10-09 09:45:39,685 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_776@tree5653.tre"... 2019-10-09 09:45:39,685 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_404@tree506.tre"... 2019-10-09 09:45:39,685 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_415@tree5572.tre"... 2019-10-09 09:45:39,685 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2300@tree4862.tre"... 2019-10-09 09:45:39,685 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1604@tree5891.tre"... 2019-10-09 09:45:39,685 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_388@tree469.tre"... 2019-10-09 09:45:39,686 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_668@tree1193.tre"... 2019-10-09 09:45:39,686 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_361@tree5551.tre"... 2019-10-09 09:45:39,686 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1165@tree2355.tre"... 2019-10-09 09:45:39,686 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_340@tree5532.tre"... 2019-10-09 09:45:39,686 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_352@tree388.tre"... 2019-10-09 09:45:39,686 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_874@tree5717.tre"... 2019-10-09 09:45:39,687 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2531@tree5449.tre"... 2019-10-09 09:45:39,687 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_733@tree1324.tre"... 2019-10-09 09:45:39,687 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1718@tree3460.tre"... 2019-10-09 09:45:39,688 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1719@tree3462.tre"... 2019-10-09 09:45:39,688 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_525@tree743.tre"... 2019-10-09 09:45:39,688 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_961@tree5754.tre"... 2019-10-09 09:45:39,688 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1177@tree5811.tre"... 2019-10-09 09:45:39,688 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1758@tree5940.tre"... 2019-10-09 09:45:39,688 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2290@tree4850.tre"... 2019-10-09 09:45:39,689 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1757@tree3539.tre"... 2019-10-09 09:45:39,689 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1691@tree3407.tre"... 2019-10-09 09:45:39,689 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1727@tree3475.tre"... 2019-10-09 09:45:39,689 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2222@tree4697.tre"... 2019-10-09 09:45:39,690 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1666@tree5901.tre"... 2019-10-09 09:45:39,690 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1669@tree5902.tre"... 2019-10-09 09:45:39,690 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1678@tree3382.tre"... 2019-10-09 09:45:39,690 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1667@tree3362.tre"... 2019-10-09 09:45:39,690 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1609@tree3245.tre"... 2019-10-09 09:45:39,690 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_353@Tr55240.tre"... 2019-10-09 09:45:39,691 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1617@tree3261.tre"... 2019-10-09 09:45:39,691 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1708@tree3445.tre"... 2019-10-09 09:45:39,691 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_883@tree1703.tre"... 2019-10-09 09:45:39,692 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_526@Tr91777.tre"... 2019-10-09 09:45:39,694 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_575@tree3.tre"... 2019-10-09 09:45:39,694 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_591@Tr53870.tre"... 2019-10-09 09:45:39,694 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_594@tree1.tre"... 2019-10-09 09:45:39,695 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_589@tree1.tre"... 2019-10-09 09:45:39,695 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_590@tree1.tre"... 2019-10-09 09:45:39,695 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_595@Tr53782.tre"... 2019-10-09 09:45:39,695 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_625@Tr53737.tre"... 2019-10-09 09:45:39,695 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_633@tree2.tre"... 2019-10-09 09:45:39,698 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_631@tree1.tre"... 2019-10-09 09:45:39,699 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_635@tree1.tre"... 2019-10-09 09:45:39,699 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_627@tree1.tre"... 2019-10-09 09:45:39,699 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_645@tree1.tre"... 2019-10-09 09:45:39,700 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_651@tree2.tre"... 2019-10-09 09:45:39,700 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2919@tree6749.tre"... 2019-10-09 09:45:39,700 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_619@tree8.tre"... 2019-10-09 09:45:39,700 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_75@tree1.tre"... 2019-10-09 09:45:39,700 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_98@tree1.tre"... 2019-10-09 09:45:39,700 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_632@tree2.tre"... 2019-10-09 09:45:39,700 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_620@tree1.tre"... 2019-10-09 09:45:39,700 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_163@tree1.tre"... 2019-10-09 09:45:39,700 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_644@tree1.tre"... 2019-10-09 09:45:39,701 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_640@tree1.tre"... 2019-10-09 09:45:39,701 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_643@tree1.tre"... 2019-10-09 09:45:39,701 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2921@tree6749.tre"... 2019-10-09 09:45:39,701 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2923@tree6751.tre"... 2019-10-09 09:45:39,703 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_646@tree1.tre"... 2019-10-09 09:45:39,703 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_71@tree1.tre"... 2019-10-09 09:45:39,703 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2922@tree6752.tre"... 2019-10-09 09:45:39,703 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_618@tree1.tre"... 2019-10-09 09:45:39,704 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_634@tree1.tre"... 2019-10-09 09:45:39,705 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2918@tree6755.tre"... 2019-10-09 09:45:39,706 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_652@tree4.tre"... 2019-10-09 09:45:39,706 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_74@tree1.tre"... 2019-10-09 09:45:39,706 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_639@tree1.tre"... 2019-10-09 09:45:39,706 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_615@Tr76459.tre"... 2019-10-09 09:45:39,707 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2917@tree6745.tre"... 2019-10-09 09:45:39,708 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_656@tree2.tre"... 2019-10-09 09:45:39,708 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2842@tree6603.tre"... 2019-10-09 09:45:39,710 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_813@tree1.tre"... 2019-10-09 09:45:39,751 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1003@Tr100305.tre"... 2019-10-09 09:45:39,764 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2827@tree6577.tre"... 2019-10-09 09:45:39,764 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_761@tree1415.tre"... 2019-10-09 09:45:39,765 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_77@tree5878.tre"... 2019-10-09 09:45:39,765 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_754@tree1392.tre"... 2019-10-09 09:45:39,766 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_330@tree325.tre"... 2019-10-09 09:45:39,766 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1131@tree2265.tre"... 2019-10-09 09:45:39,767 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2608@tree6288.tre"... 2019-10-09 09:45:39,776 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2539@tree6294.tre"... 2019-10-09 09:45:39,843 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2645@tree6165.tre"... 2019-10-09 09:45:39,844 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2644@tree6164.tre"... 2019-10-09 09:45:39,849 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2642@tree6161.tre"... 2019-10-09 09:45:39,850 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2626@tree6142.tre"... 2019-10-09 09:45:39,851 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_332@tree333.tre"... 2019-10-09 09:45:39,851 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2832@tree6586.tre"... 2019-10-09 09:45:39,851 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1866@tree3765.tre"... 2019-10-09 09:45:39,852 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_59@tree5731.tre"... 2019-10-09 09:45:39,853 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_704@tree1266.tre"... 2019-10-09 09:45:39,853 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2638@tree6157.tre"... 2019-10-09 09:45:39,854 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1974@tree4038.tre"... 2019-10-09 09:45:39,854 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1974@tree4039.tre"... 2019-10-09 09:45:39,855 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2901@tree6721.tre"... 2019-10-09 09:45:39,855 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2906@tree6730.tre"... 2019-10-09 09:45:39,856 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1524@tree3046.tre"... 2019-10-09 09:45:39,857 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1414@tree2837.tre"... 2019-10-09 09:45:39,857 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1411@tree5110.tre"... 2019-10-09 09:45:39,857 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1409@tree2822.tre"... 2019-10-09 09:45:39,858 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1408@tree2821.tre"... 2019-10-09 09:45:39,858 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1407@tree2818.tre"... 2019-10-09 09:45:39,858 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1401@tree2812.tre"... 2019-10-09 09:45:39,858 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1391@tree2795.tre"... 2019-10-09 09:45:39,859 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1434@tree2876.tre"... 2019-10-09 09:45:39,859 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2633@tree6153.tre"... 2019-10-09 09:45:39,859 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1539@tree3088.tre"... 2019-10-09 09:45:39,860 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2634@tree6154.tre"... 2019-10-09 09:45:39,860 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1022@tree1967.tre"... 2019-10-09 09:45:39,861 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_562@tree817.tre"... 2019-10-09 09:45:39,861 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_588@tree878.tre"... 2019-10-09 09:45:39,868 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2048@tree4220.tre"... 2019-10-09 09:45:39,868 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1137@tree2295.tre"... 2019-10-09 09:45:39,869 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_62@tree2878.tre"... 2019-10-09 09:45:39,869 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2841@tree6597.tre"... 2019-10-09 09:45:39,869 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2085@tree4317.tre"... 2019-10-09 09:45:39,870 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_180@tree794.tre"... 2019-10-09 09:45:39,872 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_576@tree849.tre"... 2019-10-09 09:45:39,872 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_581@tree859.tre"... 2019-10-09 09:45:39,873 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_582@tree862.tre"... 2019-10-09 09:45:39,876 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_598@tree926.tre"... 2019-10-09 09:45:39,877 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_599@tree927.tre"... 2019-10-09 09:45:39,877 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_603@tree940.tre"... 2019-10-09 09:45:39,878 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_721@tree1298.tre"... 2019-10-09 09:45:39,879 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_723@tree1300.tre"... 2019-10-09 09:45:39,879 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_921@tree4103.tre"... 2019-10-09 09:45:39,880 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_61@tree816.tre"... 2019-10-09 09:45:39,881 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_573@tree839.tre"... 2019-10-09 09:45:39,881 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_566@tree832.tre"... 2019-10-09 09:45:39,881 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1522@tree3044.tre"... 2019-10-09 09:45:39,881 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1570@tree3142.tre"... 2019-10-09 09:45:39,881 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1583@tree3194.tre"... 2019-10-09 09:45:39,882 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1572@tree3145.tre"... 2019-10-09 09:45:39,882 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2909@tree6735.tre"... 2019-10-09 09:45:39,882 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_43@tree3862.tre"... 2019-10-09 09:45:39,882 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_38@tree1750.tre"... 2019-10-09 09:45:39,882 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2878@tree6673.tre"... 2019-10-09 09:45:39,883 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2624@tree6139.tre"... 2019-10-09 09:45:39,884 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2128@tree4437.tre"... 2019-10-09 09:45:39,884 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1102@tree2177.tre"... 2019-10-09 09:45:39,884 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1129@tree2251.tre"... 2019-10-09 09:45:39,885 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1109@tree2201.tre"... 2019-10-09 09:45:39,885 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2004@tree4118.tre"... 2019-10-09 09:45:39,886 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_53@tree1280.tre"... 2019-10-09 09:45:39,886 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1118@tree2226.tre"... 2019-10-09 09:45:39,887 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2669@tree6213.tre"... 2019-10-09 09:45:39,890 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2032@tree5922.tre"... 2019-10-09 09:45:39,891 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1901@tree3877.tre"... 2019-10-09 09:45:39,891 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_713@tree1287.tre"... 2019-10-09 09:45:39,893 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2912@tree6740.tre"... 2019-10-09 09:45:39,894 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_259@tree142.tre"... 2019-10-09 09:45:39,894 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_264@tree150.tre"... 2019-10-09 09:45:39,894 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_267@tree161.tre"... 2019-10-09 09:45:39,894 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2077@tree4291.tre"... 2019-10-09 09:45:39,895 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_293@tree201.tre"... 2019-10-09 09:45:39,897 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_197@tree784.tre"... 2019-10-09 09:45:39,897 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_595@tree896.tre"... 2019-10-09 09:45:39,898 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_131@tree6236.tre"... 2019-10-09 09:45:39,900 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2689@tree6241.tre"... 2019-10-09 09:45:39,902 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_597@tree906.tre"... 2019-10-09 09:45:39,902 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2001@tree4100.tre"... 2019-10-09 09:45:39,904 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_606@tree5290.tre"... 2019-10-09 09:45:39,905 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_270@tree159.tre"... 2019-10-09 09:45:39,908 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_596@tree901.tre"... 2019-10-09 09:45:39,909 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_294@tree202.tre"... 2019-10-09 09:45:39,909 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_292@tree199.tre"... 2019-10-09 09:45:39,909 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_58@tree775.tre"... 2019-10-09 09:45:39,911 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_548@tree798.tre"... 2019-10-09 09:45:39,911 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2055@tree4234.tre"... 2019-10-09 09:45:39,912 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2057@tree4240.tre"... 2019-10-09 09:45:39,916 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2127@tree4426.tre"... 2019-10-09 09:45:39,916 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_594@tree890.tre"... 2019-10-09 09:45:39,917 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_261@tree145.tre"... 2019-10-09 09:45:39,920 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_57@tree777.tre"... 2019-10-09 09:45:39,922 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1087@tree2114.tre"... 2019-10-09 09:45:39,925 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1087@tree2115.tre"... 2019-10-09 09:45:39,926 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2690@tree6243.tre"... 2019-10-09 09:45:39,937 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_605@tree947.tre"... 2019-10-09 09:45:39,937 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_271@tree5017.tre"... 2019-10-09 09:45:39,938 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2661@tree6198.tre"... 2019-10-09 09:45:39,943 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2052@tree4228.tre"... 2019-10-09 09:45:39,943 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1103@tree2178.tre"... 2019-10-09 09:45:39,944 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_14@tree12.tre"... 2019-10-09 09:45:39,945 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2598@tree6020.tre"... 2019-10-09 09:45:39,947 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2000@tree4098.tre"... 2019-10-09 09:45:39,947 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_20@tree2162.tre"... 2019-10-09 09:45:39,948 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1101@tree2172.tre"... 2019-10-09 09:45:39,950 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2565@tree5708.tre"... 2019-10-09 09:45:39,950 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1094@tree2138.tre"... 2019-10-09 09:45:39,951 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2641@tree6160.tre"... 2019-10-09 09:45:39,953 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_99@tree5885.tre"... 2019-10-09 09:45:39,953 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_93@tree1411.tre"... 2019-10-09 09:45:39,954 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_898@tree1732.tre"... 2019-10-09 09:45:39,954 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_216@tree5865.tre"... 2019-10-09 09:45:39,954 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_901@tree1740.tre"... 2019-10-09 09:45:39,955 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2830@tree6583.tre"... 2019-10-09 09:45:39,955 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2831@tree6584.tre"... 2019-10-09 09:45:39,955 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_719@tree1296.tre"... 2019-10-09 09:45:39,955 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1975@tree4041.tre"... 2019-10-09 09:45:39,956 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1821@tree3678.tre"... 2019-10-09 09:45:39,957 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1581@tree3188.tre"... 2019-10-09 09:45:39,957 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1575@tree3164.tre"... 2019-10-09 09:45:39,957 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1573@tree3144.tre"... 2019-10-09 09:45:39,957 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_934@tree1832.tre"... 2019-10-09 09:45:39,957 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_200@tree6585.tre"... 2019-10-09 09:45:39,958 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_152@tree5743.tre"... 2019-10-09 09:45:39,958 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_53@tree1281.tre"... 2019-10-09 09:45:39,958 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2076@tree4282.tre"... 2019-10-09 09:45:39,958 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_50@tree1397.tre"... 2019-10-09 09:45:39,959 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_80@tree5881.tre"... 2019-10-09 09:45:39,959 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_424@tree532.tre"... 2019-10-09 09:45:39,960 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_82@tree5792.tre"... 2019-10-09 09:45:39,960 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1962@tree6580.tre"... 2019-10-09 09:45:39,961 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_915@tree1802.tre"... 2019-10-09 09:45:39,962 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_32@tree1775.tre"... 2019-10-09 09:45:39,963 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_915@tree1803.tre"... 2019-10-09 09:45:39,964 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2625@tree6140.tre"... 2019-10-09 09:45:39,964 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1130@tree2258.tre"... 2019-10-09 09:45:39,965 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2047@tree4217.tre"... 2019-10-09 09:45:39,965 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_386@tree459.tre"... 2019-10-09 09:45:39,966 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_139@tree5860.tre"... 2019-10-09 09:45:39,966 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_126@tree2233.tre"... 2019-10-09 09:45:39,968 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_136@tree5857.tre"... 2019-10-09 09:45:39,968 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1944@tree3959.tre"... 2019-10-09 09:45:39,978 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2828@tree6578.tre"... 2019-10-09 09:45:39,979 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_142@tree38.tre"... 2019-10-09 09:45:39,980 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_21@tree37.tre"... 2019-10-09 09:45:39,983 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_75@tree1743.tre"... 2019-10-09 09:45:39,984 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_41@tree1396.tre"... 2019-10-09 09:45:39,984 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2044@tree4212.tre"... 2019-10-09 09:45:39,986 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1916@tree3902.tre"... 2019-10-09 09:45:39,988 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_926@tree1825.tre"... 2019-10-09 09:45:39,993 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1133@tree5647.tre"... 2019-10-09 09:45:39,996 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_625@tree1016.tre"... 2019-10-09 09:45:39,996 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1842@tree3724.tre"... 2019-10-09 09:45:39,997 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_288@tree5028.tre"... 2019-10-09 09:45:39,998 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_385@tree458.tre"... 2019-10-09 09:45:39,999 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1843@tree3725.tre"... 2019-10-09 09:45:40,000 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1858@tree3754.tre"... 2019-10-09 09:45:40,001 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_394@tree483.tre"... 2019-10-09 09:45:40,002 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_52@tree463.tre"... 2019-10-09 09:45:40,002 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2712@tree6296.tre"... 2019-10-09 09:45:40,019 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2610@tree6117.tre"... 2019-10-09 09:45:40,024 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_650@tree1147.tre"... 2019-10-09 09:45:40,024 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_275@tree167.tre"... 2019-10-09 09:45:40,026 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_37@tree5871.tre"... 2019-10-09 09:45:40,026 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_73@tree5787.tre"... 2019-10-09 09:45:40,027 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_88@tree5848.tre"... 2019-10-09 09:45:40,027 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_72@tree801.tre"... 2019-10-09 09:45:40,031 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_283@tree184.tre"... 2019-10-09 09:45:40,031 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_30@tree2281.tre"... 2019-10-09 09:45:40,032 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1443@tree2917.tre"... 2019-10-09 09:45:40,032 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2140@tree4483.tre"... 2019-10-09 09:45:40,033 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2820@tree6566.tre"... 2019-10-09 09:45:40,045 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1483@tree2983.tre"... 2019-10-09 09:45:40,045 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1478@tree2974.tre"... 2019-10-09 09:45:40,045 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1474@tree2969.tre"... 2019-10-09 09:45:40,046 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1473@tree2967.tre"... 2019-10-09 09:45:40,046 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1453@tree2932.tre"... 2019-10-09 09:45:40,046 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1450@tree2926.tre"... 2019-10-09 09:45:40,047 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1384@tree2766.tre"... 2019-10-09 09:45:40,047 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1382@tree2763.tre"... 2019-10-09 09:45:40,047 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1318@tree2634.tre"... 2019-10-09 09:45:40,049 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1312@tree2628.tre"... 2019-10-09 09:45:40,050 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2165@tree4564.tre"... 2019-10-09 09:45:40,051 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1518@tree6333.tre"... 2019-10-09 09:45:40,051 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2898@tree6713.tre"... 2019-10-09 09:45:40,051 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2896@tree6709.tre"... 2019-10-09 09:45:40,052 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1264@tree2544.tre"... 2019-10-09 09:45:40,052 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_56@tree5821.tre"... 2019-10-09 09:45:40,053 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2648@tree6171.tre"... 2019-10-09 09:45:40,053 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2564@tree5699.tre"... 2019-10-09 09:45:40,055 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_81@tree5863.tre"... 2019-10-09 09:45:40,055 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1996@tree4089.tre"... 2019-10-09 09:45:40,056 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1446@tree2921.tre"... 2019-10-09 09:45:40,056 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2039@tree4198.tre"... 2019-10-09 09:45:40,058 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2042@tree4202.tre"... 2019-10-09 09:45:40,058 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1942@tree3962.tre"... 2019-10-09 09:45:40,058 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1868@tree3767.tre"... 2019-10-09 09:45:40,058 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1567@tree3137.tre"... 2019-10-09 09:45:40,058 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_244@tree3855.tre"... 2019-10-09 09:45:40,059 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2879@tree6674.tre"... 2019-10-09 09:45:40,065 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_412@tree2166.tre"... 2019-10-09 09:45:40,070 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_225@tree5991.tre"... 2019-10-09 09:45:40,096 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1867@tree3766.tre"... 2019-10-09 09:45:40,098 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1278@tree2572.tre"... 2019-10-09 09:45:40,100 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1268@tree2560.tre"... 2019-10-09 09:45:40,101 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_787@tree1489.tre"... 2019-10-09 09:45:40,101 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2046@tree5928.tre"... 2019-10-09 09:45:40,102 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_859@tree1.tre"... 2019-10-09 09:45:40,108 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_502@tree1.tre"... 2019-10-09 09:45:40,193 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_709@tree1.tre"... 2019-10-09 09:45:40,194 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2876@tree6670.tre"... 2019-10-09 09:45:40,195 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2926@tree6757.tre"... 2019-10-09 09:45:40,195 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_120@tree1.tre"... 2019-10-09 09:45:40,195 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_119@tree1.tre"... 2019-10-09 09:45:40,195 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_118@tree1.tre"... 2019-10-09 09:45:40,195 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_425@tree1.tre"... 2019-10-09 09:45:40,198 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_753@tree1.tre"... 2019-10-09 09:45:40,199 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2804@tree6511.tre"... 2019-10-09 09:45:40,202 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1002@tree1.tre"... 2019-10-09 09:45:40,203 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_731@tree2.tre"... 2019-10-09 09:45:40,203 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2866@tree6656.tre"... 2019-10-09 09:45:40,205 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2860@tree6646.tre"... 2019-10-09 09:45:40,206 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1022@tree1.tre"... 2019-10-09 09:45:40,206 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_150@tree3.tre"... 2019-10-09 09:45:40,207 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_870@tree1.tre"... 2019-10-09 09:45:40,207 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_156@tree1.tre"... 2019-10-09 09:45:40,209 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_153@tree1.tre"... 2019-10-09 09:45:40,210 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_830@tree1.tre"... 2019-10-09 09:45:40,210 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_151@tree1.tre"... 2019-10-09 09:45:40,210 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_154@tree1.tre"... 2019-10-09 09:45:40,210 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_155@tree1.tre"... 2019-10-09 09:45:40,210 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_152@tree1.tre"... 2019-10-09 09:45:40,210 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_157@tree1.tre"... 2019-10-09 09:45:40,210 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_158@tree1.tre"... 2019-10-09 09:45:40,210 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_504@tree3.tre"... 2019-10-09 09:45:40,212 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_159@tree1.tre"... 2019-10-09 09:45:40,213 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_794@tree2.tre"... 2019-10-09 09:45:40,213 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_144@tree1.tre"... 2019-10-09 09:45:40,214 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_136@tree1.tre"... 2019-10-09 09:45:40,214 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_289@tree1.tre"... 2019-10-09 09:45:40,214 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_873@tree1.tre"... 2019-10-09 09:45:40,214 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_816@tree1.tre"... 2019-10-09 09:45:40,215 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_146@tree1.tre"... 2019-10-09 09:45:40,218 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2371@tree4985.tre"... 2019-10-09 09:45:40,218 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_305@tree1.tre"... 2019-10-09 09:45:40,218 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2857@tree6628.tre"... 2019-10-09 09:45:40,218 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1887@tree6629.tre"... 2019-10-09 09:45:40,219 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_812@tree4.tre"... 2019-10-09 09:45:40,219 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2850@tree6620.tre"... 2019-10-09 09:45:40,219 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_655@tree1.tre"... 2019-10-09 09:45:40,220 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2444@tree6526.tre"... 2019-10-09 09:45:40,221 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_769@tree3.tre"... 2019-10-09 09:45:40,221 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2870@tree6662.tre"... 2019-10-09 09:45:40,221 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2871@tree6663.tre"... 2019-10-09 09:45:40,221 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_166@tree1.tre"... 2019-10-09 09:45:40,222 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_161@tree1.tre"... 2019-10-09 09:45:40,222 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_160@tree1.tre"... 2019-10-09 09:45:40,223 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_162@tree1.tre"... 2019-10-09 09:45:40,223 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_164@tree1.tre"... 2019-10-09 09:45:40,223 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_165@tree1.tre"... 2019-10-09 09:45:40,223 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_167@tree1.tre"... 2019-10-09 09:45:40,223 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_313@tree2.tre"... 2019-10-09 09:45:40,223 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1979@tree6300.tre"... 2019-10-09 09:45:40,224 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_312@tree1.tre"... 2019-10-09 09:45:40,225 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2805@tree6512.tre"... 2019-10-09 09:45:40,226 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2806@tree6529.tre"... 2019-10-09 09:45:40,227 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_112@tree1.tre"... 2019-10-09 09:45:40,227 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2853@tree6624.tre"... 2019-10-09 09:45:40,230 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2865@tree6654.tre"... 2019-10-09 09:45:40,230 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_123@tree1.tre"... 2019-10-09 09:45:40,230 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2872@tree6665.tre"... 2019-10-09 09:45:40,231 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_125@tree1.tre"... 2019-10-09 09:45:40,231 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_126@tree1.tre"... 2019-10-09 09:45:40,231 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_415@tree2.tre"... 2019-10-09 09:45:40,231 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1872@tree3780.tre"... 2019-10-09 09:45:40,232 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_806@tree2.tre"... 2019-10-09 09:45:40,232 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2798@tree6497.tre"... 2019-10-09 09:45:40,232 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_786@Tr53559.tre"... 2019-10-09 09:45:40,233 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1764@tree6299.tre"... 2019-10-09 09:45:40,233 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_137@tree1.tre"... 2019-10-09 09:45:40,233 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_140@tree1.tre"... 2019-10-09 09:45:40,233 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_104@tree1.tre"... 2019-10-09 09:45:40,233 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_142@tree1.tre"... 2019-10-09 09:45:40,234 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_138@tree1.tre"... 2019-10-09 09:45:40,234 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2864@tree6651.tre"... 2019-10-09 09:45:40,234 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_820@tree2.tre"... 2019-10-09 09:45:40,234 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_139@tree1.tre"... 2019-10-09 09:45:40,234 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_862@tree1.tre"... 2019-10-09 09:45:40,234 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2416@tree3.tre"... 2019-10-09 09:45:40,235 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_533@tree2.tre"... 2019-10-09 09:45:40,235 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_773@tree1.tre"... 2019-10-09 09:45:40,236 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_867@tree2.tre"... 2019-10-09 09:45:40,237 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_116@tree1.tre"... 2019-10-09 09:45:40,238 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_148@tree1.tre"... 2019-10-09 09:45:40,238 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_149@tree4.tre"... 2019-10-09 09:45:40,238 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_835@tree1.tre"... 2019-10-09 09:45:40,238 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_837@tree1.tre"... 2019-10-09 09:45:40,239 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_846@tree1.tre"... 2019-10-09 09:45:40,239 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_121@tree7.tre"... 2019-10-09 09:45:40,240 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2869@tree6661.tre"... 2019-10-09 09:45:40,241 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_122@tree1.tre"... 2019-10-09 09:45:40,241 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_864@tree1.tre"... 2019-10-09 09:45:40,241 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_124@tree1.tre"... 2019-10-09 09:45:40,241 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_129@tree1.tre"... 2019-10-09 09:45:40,242 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_147@tree1.tre"... 2019-10-09 09:45:40,242 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_838@tree1.tre"... 2019-10-09 09:45:40,242 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_747@tree3.tre"... 2019-10-09 09:45:40,242 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2796@tree6491.tre"... 2019-10-09 09:45:40,243 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1953@tree3977.tre"... 2019-10-09 09:45:40,246 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_866@tree1.tre"... 2019-10-09 09:45:40,246 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2454@tree5247.tre"... 2019-10-09 09:45:40,247 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2890@tree6701.tre"... 2019-10-09 09:45:40,247 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_815@tree2.tre"... 2019-10-09 09:45:40,247 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1966@tree4019.tre"... 2019-10-09 09:45:40,247 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_174@tree1.tre"... 2019-10-09 09:45:40,248 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_768@tree1.tre"... 2019-10-09 09:45:40,248 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_824@tree1.tre"... 2019-10-09 09:45:40,248 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2875@tree6668.tre"... 2019-10-09 09:45:40,248 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_763@tree1.tre"... 2019-10-09 09:45:40,249 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_823@tree1.tre"... 2019-10-09 09:45:40,249 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_853@tree1.tre"... 2019-10-09 09:45:40,249 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2702@tree6274.tre"... 2019-10-09 09:45:40,252 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_520@tree1.tre"... 2019-10-09 09:45:40,259 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_863@tree2.tre"... 2019-10-09 09:45:40,260 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_172@tree1.tre"... 2019-10-09 09:45:40,260 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2845@tree6606.tre"... 2019-10-09 09:45:40,261 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1854@tree3743.tre"... 2019-10-09 09:45:40,261 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_882@tree1.tre"... 2019-10-09 09:45:40,261 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2599@tree6021.tre"... 2019-10-09 09:45:40,262 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_176@tree1.tre"... 2019-10-09 09:45:40,262 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_177@tree1.tre"... 2019-10-09 09:45:40,262 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_834@tree1.tre"... 2019-10-09 09:45:40,263 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_178@tree1.tre"... 2019-10-09 09:45:40,263 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_103@tree4.tre"... 2019-10-09 09:45:40,264 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_914@tree1.tre"... 2019-10-09 09:45:40,264 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_832@tree1.tre"... 2019-10-09 09:45:40,264 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1586@tree3208.tre"... 2019-10-09 09:45:40,267 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2332@tree4912.tre"... 2019-10-09 09:45:40,267 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2105@tree4360.tre"... 2019-10-09 09:45:40,267 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_822@tree1.tre"... 2019-10-09 09:45:40,267 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_856@tree1.tre"... 2019-10-09 09:45:40,267 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_110@tree1.tre"... 2019-10-09 09:45:40,267 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_894@tree1.tre"... 2019-10-09 09:45:40,268 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_749@tree1.tre"... 2019-10-09 09:45:40,268 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_848@tree1.tre"... 2019-10-09 09:45:40,268 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_180@tree1.tre"... 2019-10-09 09:45:40,270 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_179@tree1.tre"... 2019-10-09 09:45:40,270 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_880@tree1.tre"... 2019-10-09 09:45:40,270 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2858@tree6642.tre"... 2019-10-09 09:45:40,271 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_827@tree1.tre"... 2019-10-09 09:45:40,271 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2874@tree6667.tre"... 2019-10-09 09:45:40,271 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_172@tree2.tre"... 2019-10-09 09:45:40,271 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2692@tree6245.tre"... 2019-10-09 09:45:40,273 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_113@tree1.tre"... 2019-10-09 09:45:40,273 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2707@tree6281.tre"... 2019-10-09 09:45:40,274 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2591@tree6024.tre"... 2019-10-09 09:45:40,275 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_891@tree1.tre"... 2019-10-09 09:45:40,275 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2829@tree6579.tre"... 2019-10-09 09:45:40,279 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_101@tree1.tre"... 2019-10-09 09:45:40,279 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_102@tree1.tre"... 2019-10-09 09:45:40,279 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_169@tree1.tre"... 2019-10-09 09:45:40,279 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2924@tree6755.tre"... 2019-10-09 09:45:40,281 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_171@tree1.tre"... 2019-10-09 09:45:40,281 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_170@tree1.tre"... 2019-10-09 09:45:40,281 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_173@tree1.tre"... 2019-10-09 09:45:40,281 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2600@tree6022.tre"... 2019-10-09 09:45:40,282 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_175@tree1.tre"... 2019-10-09 09:45:40,282 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_783@tree1.tre"... 2019-10-09 09:45:40,291 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_843@tree3.tre"... 2019-10-09 09:45:40,292 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_770@tree1.tre"... 2019-10-09 09:45:40,299 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2575@tree5974.tre"... 2019-10-09 09:45:40,302 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2913@tree6742.tre"... 2019-10-09 09:45:40,310 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_111@tree1.tre"... 2019-10-09 09:45:40,313 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_172@tree3.tre"... 2019-10-09 09:45:40,313 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_290@tree1.tre"... 2019-10-09 09:45:40,366 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2015@tree4152.tre"... 2019-10-09 09:45:40,374 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_854@tree1.tre"... 2019-10-09 09:45:40,376 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_855@tree1.tre"... 2019-10-09 09:45:40,377 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_841@tree1.tre"... 2019-10-09 09:45:40,379 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_836@tree1.tre"... 2019-10-09 09:45:40,380 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_874@tree1.tre"... 2019-10-09 09:45:40,381 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2404@tree5068.tre"... 2019-10-09 09:45:40,384 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_757@Tr70438.tre"... 2019-10-09 09:45:40,391 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_412@Tr77157.tre"... 2019-10-09 09:45:40,394 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_532@tree1.tre"... 2019-10-09 09:45:40,397 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_782@Tr48736.tre"... 2019-10-09 09:45:40,400 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_831@tree2.tre"... 2019-10-09 09:45:40,400 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_869@tree1.tre"... 2019-10-09 09:45:40,400 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_847@tree1.tre"... 2019-10-09 09:45:40,402 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_500@tree1.tre"... 2019-10-09 09:45:40,407 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_531@tree1.tre"... 2019-10-09 09:45:40,413 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2913@tree6741.tre"... 2019-10-09 09:45:40,417 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_809@tree2.tre"... 2019-10-09 09:45:40,509 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_521@tree1.tre"... 2019-10-09 09:45:40,609 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_764@tree1.tre"... 2019-10-09 09:45:40,616 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2577@tree5980.tre"... 2019-10-09 09:45:40,618 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_420@tree522.tre"... 2019-10-09 09:45:40,636 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_314@tree1.tre"... 2019-10-09 09:45:40,638 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2861@tree6647.tre"... 2019-10-09 09:45:40,638 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2859@tree6643.tre"... 2019-10-09 09:45:40,643 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1797@tree3635.tre"... 2019-10-09 09:45:40,643 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2844@tree6605.tre"... 2019-10-09 09:45:40,643 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2843@tree6604.tre"... 2019-10-09 09:45:40,643 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2825@tree6572.tre"... 2019-10-09 09:45:40,644 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2695@tree6250.tre"... 2019-10-09 09:45:40,644 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2656@tree6185.tre"... 2019-10-09 09:45:40,648 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1600@tree3231.tre"... 2019-10-09 09:45:40,651 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2688@tree6240.tre"... 2019-10-09 09:45:40,673 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2359@tree4962.tre"... 2019-10-09 09:45:40,674 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2687@tree6239.tre"... 2019-10-09 09:45:40,674 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2691@tree6244.tre"... 2019-10-09 09:45:40,674 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2685@tree6235.tre"... 2019-10-09 09:45:40,675 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_168@tree1.tre"... 2019-10-09 09:45:40,675 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_254@Tr87680.tre"... 2019-10-09 09:45:40,690 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1634@tree3303.tre"... 2019-10-09 09:45:40,701 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1927@tree6215.tre"... 2019-10-09 09:45:40,702 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2587@tree5998.tre"... 2019-10-09 09:45:40,703 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1981@tree4052.tre"... 2019-10-09 09:45:40,703 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2684@tree6644.tre"... 2019-10-09 09:45:40,703 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1428@tree2855.tre"... 2019-10-09 09:45:40,712 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1646@tree6231.tre"... 2019-10-09 09:45:40,712 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2833@tree6588.tre"... 2019-10-09 09:45:40,726 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2834@tree6589.tre"... 2019-10-09 09:45:40,727 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2816@tree6556.tre"... 2019-10-09 09:45:40,728 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2741@tree6645.tre"... 2019-10-09 09:45:40,731 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2589@tree6001.tre"... 2019-10-09 09:45:40,734 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2655@tree6181.tre"... 2019-10-09 09:45:40,735 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1997@tree6183.tre"... 2019-10-09 09:45:40,738 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2654@tree6179.tre"... 2019-10-09 09:45:40,738 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2585@tree5994.tre"... 2019-10-09 09:45:40,739 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2653@tree6178.tre"... 2019-10-09 09:45:40,742 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2657@tree6191.tre"... 2019-10-09 09:45:40,743 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2551@tree6180.tre"... 2019-10-09 09:45:40,748 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2576@tree5975.tre"... 2019-10-09 09:45:40,761 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1870@tree3769.tre"... 2019-10-09 09:45:40,765 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_979@tree1.tre"... 2019-10-09 09:45:40,766 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2659@tree6195.tre"... 2019-10-09 09:45:40,767 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_181@tree2.tre"... 2019-10-09 09:45:40,770 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_750@tree2.tre"... 2019-10-09 09:45:40,771 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_814@tree2.tre"... 2019-10-09 09:45:40,775 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2881@tree6680.tre"... 2019-10-09 09:45:40,776 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2143@tree4505.tre"... 2019-10-09 09:45:40,776 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2098@tree6487.tre"... 2019-10-09 09:45:40,776 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2851@tree6621.tre"... 2019-10-09 09:45:40,777 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2415@tree5096.tre"... 2019-10-09 09:45:40,779 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_423@tree2857.tre"... 2019-10-09 09:45:40,810 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2573@tree5959.tre"... 2019-10-09 09:45:40,810 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2711@tree6295.tre"... 2019-10-09 09:45:40,811 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_307@tree1.tre"... 2019-10-09 09:45:40,856 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2460@tree5285.tre"... 2019-10-09 09:45:40,902 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1252@tree2661.tre"... 2019-10-09 09:45:40,903 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1336@tree2660.tre"... 2019-10-09 09:45:40,904 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1948@tree6513.tre"... 2019-10-09 09:45:40,905 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1796@tree6514.tre"... 2019-10-09 09:45:40,905 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2243@tree6515.tre"... 2019-10-09 09:45:40,905 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2670@tree6214.tre"... 2019-10-09 09:45:40,906 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2671@tree6216.tre"... 2019-10-09 09:45:40,906 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2673@tree6219.tre"... 2019-10-09 09:45:40,907 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2674@tree6220.tre"... 2019-10-09 09:45:40,907 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2675@tree6221.tre"... 2019-10-09 09:45:40,908 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2676@tree6222.tre"... 2019-10-09 09:45:40,908 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2677@tree6223.tre"... 2019-10-09 09:45:40,910 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2682@tree6227.tre"... 2019-10-09 09:45:40,911 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2683@tree6228.tre"... 2019-10-09 09:45:40,911 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2807@tree6519.tre"... 2019-10-09 09:45:40,912 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2808@tree6522.tre"... 2019-10-09 09:45:40,912 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2667@tree6211.tre"... 2019-10-09 09:45:40,912 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2838@tree6594.tre"... 2019-10-09 09:45:40,914 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2087@tree4323.tre"... 2019-10-09 09:45:40,914 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1988@tree4074.tre"... 2019-10-09 09:45:40,918 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2593@tree6247.tre"... 2019-10-09 09:45:40,918 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2614@tree6121.tre"... 2019-10-09 09:45:40,919 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2628@tree6143.tre"... 2019-10-09 09:45:40,919 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2323@tree6537.tre"... 2019-10-09 09:45:40,920 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1940@tree3943.tre"... 2019-10-09 09:45:40,922 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_437@tree6242.tre"... 2019-10-09 09:45:40,925 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2594@tree6014.tre"... 2019-10-09 09:45:40,926 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2357@tree6538.tre"... 2019-10-09 09:45:40,926 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1000@tree1.tre"... 2019-10-09 09:45:40,930 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_251@tree134.tre"... 2019-10-09 09:45:40,934 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1849@tree3731.tre"... 2019-10-09 09:45:40,937 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2811@tree6533.tre"... 2019-10-09 09:45:40,937 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2604@tree6043.tre"... 2019-10-09 09:45:40,952 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1563@tree6170.tre"... 2019-10-09 09:45:40,954 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2664@tree6201.tre"... 2019-10-09 09:45:40,960 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1776@tree3581.tre"... 2019-10-09 09:45:40,962 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_185@tree1.tre"... 2019-10-09 09:45:40,964 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1337@tree6167.tre"... 2019-10-09 09:45:40,965 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2629@tree6162.tre"... 2019-10-09 09:45:40,966 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2156@tree5953.tre"... 2019-10-09 09:45:40,966 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1338@tree2666.tre"... 2019-10-09 09:45:40,967 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2422@tree5117.tre"... 2019-10-09 09:45:40,967 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_182@tree1.tre"... 2019-10-09 09:45:40,968 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_183@tree2.tre"... 2019-10-09 09:45:40,969 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2061@tree4245.tre"... 2019-10-09 09:45:40,969 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2068@tree6488.tre"... 2019-10-09 09:45:40,969 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2405@tree6669.tre"... 2019-10-09 09:45:40,970 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_650@tree1.tre"... 2019-10-09 09:45:40,971 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1366@tree6166.tre"... 2019-10-09 09:45:40,971 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2092@tree4335.tre"... 2019-10-09 09:45:40,972 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2544@tree6482.tre"... 2019-10-09 09:45:40,972 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2709@tree6290.tre"... 2019-10-09 09:45:40,978 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2708@tree6289.tre"... 2019-10-09 09:45:40,980 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1343@tree6255.tre"... 2019-10-09 09:45:40,980 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2678@tree6224.tre"... 2019-10-09 09:45:40,981 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_421@tree523.tre"... 2019-10-09 09:45:40,982 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2710@tree6291.tre"... 2019-10-09 09:45:40,984 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1340@tree2669.tre"... 2019-10-09 09:45:40,984 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_659@tree1.tre"... 2019-10-09 09:45:40,985 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_642@tree1.tre"... 2019-10-09 09:45:40,986 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_736@tree1.tre"... 2019-10-09 09:45:40,987 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_505@tree1.tre"... 2019-10-09 09:45:40,991 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_741@tree1.tre"... 2019-10-09 09:45:40,991 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_722@tree1.tre"... 2019-10-09 09:45:40,993 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_805@tree1.tre"... 2019-10-09 09:45:40,993 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_811@tree1.tre"... 2019-10-09 09:45:40,995 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_508@tree2.tre"... 2019-10-09 09:45:40,997 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_509@tree1.tre"... 2019-10-09 09:45:40,998 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_649@tree1.tre"... 2019-10-09 09:45:40,999 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_335@tree360.tre"... 2019-10-09 09:45:40,999 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_338@tree5527.tre"... 2019-10-09 09:45:40,999 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_339@tree365.tre"... 2019-10-09 09:45:40,999 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_343@tree5534.tre"... 2019-10-09 09:45:40,999 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_348@tree381.tre"... 2019-10-09 09:45:41,000 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_349@tree5539.tre"... 2019-10-09 09:45:41,000 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_353@tree5542.tre"... 2019-10-09 09:45:41,000 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_358@tree406.tre"... 2019-10-09 09:45:41,000 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_366@tree5552.tre"... 2019-10-09 09:45:41,000 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_367@tree418.tre"... 2019-10-09 09:45:41,000 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_368@tree5553.tre"... 2019-10-09 09:45:41,000 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_369@tree5554.tre"... 2019-10-09 09:45:41,000 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_370@tree426.tre"... 2019-10-09 09:45:41,001 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_372@tree431.tre"... 2019-10-09 09:45:41,001 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_373@tree432.tre"... 2019-10-09 09:45:41,001 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_374@tree433.tre"... 2019-10-09 09:45:41,002 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_375@tree436.tre"... 2019-10-09 09:45:41,002 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_376@tree438.tre"... 2019-10-09 09:45:41,002 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_380@tree5560.tre"... 2019-10-09 09:45:41,002 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_382@tree449.tre"... 2019-10-09 09:45:41,002 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_387@tree5562.tre"... 2019-10-09 09:45:41,002 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_389@tree470.tre"... 2019-10-09 09:45:41,002 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_393@tree482.tre"... 2019-10-09 09:45:41,002 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_397@tree494.tre"... 2019-10-09 09:45:41,002 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_399@tree5565.tre"... 2019-10-09 09:45:41,003 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_400@tree497.tre"... 2019-10-09 09:45:41,003 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_403@tree503.tre"... 2019-10-09 09:45:41,003 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_405@tree507.tre"... 2019-10-09 09:45:41,003 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_407@tree513.tre"... 2019-10-09 09:45:41,003 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_408@tree5571.tre"... 2019-10-09 09:45:41,003 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_411@tree518.tre"... 2019-10-09 09:45:41,003 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_414@tree519.tre"... 2019-10-09 09:45:41,004 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_430@tree541.tre"... 2019-10-09 09:45:41,004 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_441@tree5575.tre"... 2019-10-09 09:45:41,004 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_444@tree564.tre"... 2019-10-09 09:45:41,004 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_446@tree565.tre"... 2019-10-09 09:45:41,004 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_447@tree5576.tre"... 2019-10-09 09:45:41,004 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_448@tree5577.tre"... 2019-10-09 09:45:41,004 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_449@tree570.tre"... 2019-10-09 09:45:41,004 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_450@tree574.tre"... 2019-10-09 09:45:41,005 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_470@tree615.tre"... 2019-10-09 09:45:41,005 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_471@tree617.tre"... 2019-10-09 09:45:41,005 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_473@tree623.tre"... 2019-10-09 09:45:41,005 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_474@tree627.tre"... 2019-10-09 09:45:41,005 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_475@tree5594.tre"... 2019-10-09 09:45:41,005 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_477@tree633.tre"... 2019-10-09 09:45:41,005 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_479@tree636.tre"... 2019-10-09 09:45:41,005 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_480@tree637.tre"... 2019-10-09 09:45:41,006 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_481@tree644.tre"... 2019-10-09 09:45:41,006 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_482@tree5595.tre"... 2019-10-09 09:45:41,006 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_483@tree647.tre"... 2019-10-09 09:45:41,006 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_701@Tr90392.tre"... 2019-10-09 09:45:41,006 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_703@Tr88391.tre"... 2019-10-09 09:45:41,006 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_705@Tr93612.tre"... 2019-10-09 09:45:41,006 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_466@Tr89358.tre"... 2019-10-09 09:45:41,007 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_997@tree1.tre"... 2019-10-09 09:45:41,007 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2448@tree5223.tre"... 2019-10-09 09:45:41,033 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2739@tree6601.tre"... 2019-10-09 09:45:41,044 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2554@tree5580.tre"... 2019-10-09 09:45:41,045 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2715@tree6308.tre"... 2019-10-09 09:45:41,046 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2753@tree6360.tre"... 2019-10-09 09:45:41,047 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_263@tree149.tre"... 2019-10-09 09:45:41,047 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2542@tree5590.tre"... 2019-10-09 09:45:41,083 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2737@tree6322.tre"... 2019-10-09 09:45:41,084 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2738@tree6323.tre"... 2019-10-09 09:45:41,084 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2738@tree6324.tre"... 2019-10-09 09:45:41,085 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2892@tree6700.tre"... 2019-10-09 09:45:41,086 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2891@tree6699.tre"... 2019-10-09 09:45:41,087 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_106@tree1.tre"... 2019-10-09 09:45:41,088 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2731@tree6428.tre"... 2019-10-09 09:45:41,088 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2713@tree6309.tre"... 2019-10-09 09:45:41,089 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2742@tree6342.tre"... 2019-10-09 09:45:41,089 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2757@tree6369.tre"... 2019-10-09 09:45:41,095 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2553@tree5579.tre"... 2019-10-09 09:45:41,096 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2556@tree5586.tre"... 2019-10-09 09:45:41,096 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_312@tree264.tre"... 2019-10-09 09:45:41,097 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_313@tree6681.tre"... 2019-10-09 09:45:41,098 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2484@tree6607.tre"... 2019-10-09 09:45:41,099 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2849@tree6615.tre"... 2019-10-09 09:45:41,100 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2822@tree6569.tre"... 2019-10-09 09:45:41,103 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_624@tree2.tre"... 2019-10-09 09:45:41,103 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_711@tree1.tre"... 2019-10-09 09:45:41,104 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_44@Tr64893.tre"... 2019-10-09 09:45:41,106 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_19@Tr63070.tre"... 2019-10-09 09:45:41,106 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_108@tree4130.tre"... 2019-10-09 09:45:41,107 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_422@tree530.tre"... 2019-10-09 09:45:41,113 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_278@tree1.tre"... 2019-10-09 09:45:41,114 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_97@tree4.tre"... 2019-10-09 09:45:41,114 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_488@Tr77496.tre"... 2019-10-09 09:45:41,115 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2404@tree6388.tre"... 2019-10-09 09:45:41,119 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_623@tree2.tre"... 2019-10-09 09:45:41,120 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_597@Tr53543.tre"... 2019-10-09 09:45:41,120 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2071@tree4264.tre"... 2019-10-09 09:45:41,121 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_530@Tr81397.tre"... 2019-10-09 09:45:41,122 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_331@Tr77751.tre"... 2019-10-09 09:45:41,122 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_340@Tr52077.tre"... 2019-10-09 09:45:41,123 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2647@tree6169.tre"... 2019-10-09 09:45:41,124 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_453@Tr87992.tre"... 2019-10-09 09:45:41,125 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1879@tree3796.tre"... 2019-10-09 09:45:41,125 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2618@tree6130.tre"... 2019-10-09 09:45:41,126 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_389@Tr63300.tre"... 2019-10-09 09:45:41,127 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_115@tree1.tre"... 2019-10-09 09:45:41,127 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_827@tree1585.tre"... 2019-10-09 09:45:41,128 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_26@Tr3688.tre"... 2019-10-09 09:45:41,128 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2916@tree6744.tre"... 2019-10-09 09:45:41,129 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_317@Tr53059.tre"... 2019-10-09 09:45:41,130 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_458@Tr80994.tre"... 2019-10-09 09:45:41,130 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2927@tree6760.tre"... 2019-10-09 09:45:41,131 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_443@Tr74361.tre"... 2019-10-09 09:45:41,131 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_404@tree505.tre"... 2019-10-09 09:45:41,132 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2812@tree6545.tre"... 2019-10-09 09:45:41,138 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_131@tree1.tre"... 2019-10-09 09:45:41,138 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_657@tree4.tre"... 2019-10-09 09:45:41,138 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_535@tree1.tre"... 2019-10-09 09:45:41,155 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_534@tree1.tre"... 2019-10-09 09:45:41,163 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_546@Tr85942.tre"... 2019-10-09 09:45:41,163 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_105@tree1.tre"... 2019-10-09 09:45:41,163 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_114@tree1.tre"... 2019-10-09 09:45:41,164 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_132@tree1.tre"... 2019-10-09 09:45:41,164 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_218@tree4.tre"... 2019-10-09 09:45:41,164 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_221@Tr72273.tre"... 2019-10-09 09:45:41,164 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_26@Tr3687.tre"... 2019-10-09 09:45:41,165 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_435@Tr70597.tre"... 2019-10-09 09:45:41,165 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_445@Tr75519.tre"... 2019-10-09 09:45:41,165 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1879@tree3798.tre"... 2019-10-09 09:45:41,166 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_447@Tr75532.tre"... 2019-10-09 09:45:41,166 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_555@Tr92138.tre"... 2019-10-09 09:45:41,166 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_559@Tr70451.tre"... 2019-10-09 09:45:41,166 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_647@tree2.tre"... 2019-10-09 09:45:41,167 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_580@tree856.tre"... 2019-10-09 09:45:41,167 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1217@tree2455.tre"... 2019-10-09 09:45:41,169 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1632@tree3298.tre"... 2019-10-09 09:45:41,169 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2701@tree6271.tre"... 2019-10-09 09:45:41,170 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2775@tree6432.tre"... 2019-10-09 09:45:41,170 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2793@tree6705.tre"... 2019-10-09 09:45:41,170 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2813@tree6550.tre"... 2019-10-09 09:45:41,171 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2889@tree6698.tre"... 2019-10-09 09:45:41,171 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2814@tree6551.tre"... 2019-10-09 09:45:41,173 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_752@tree1.tre"... 2019-10-09 09:45:41,174 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_306@tree1.tre"... 2019-10-09 09:45:41,177 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1016@tree1.tre"... 2019-10-09 09:45:41,177 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1019@tree1.tre"... 2019-10-09 09:45:41,177 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1019@tree2.tre"... 2019-10-09 09:45:41,177 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1019@tree3.tre"... 2019-10-09 09:45:41,177 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1019@tree4.tre"... 2019-10-09 09:45:41,177 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1020@tree1.tre"... 2019-10-09 09:45:41,178 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1023@tree1.tre"... 2019-10-09 09:45:41,178 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1024@tree1.tre"... 2019-10-09 09:45:41,179 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1025@tree1.tre"... 2019-10-09 09:45:41,179 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1025@tree2.tre"... 2019-10-09 09:45:41,179 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1027@tree1.tre"... 2019-10-09 09:45:41,180 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1027@tree2.tre"... 2019-10-09 09:45:41,180 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1029@tree1.tre"... 2019-10-09 09:45:41,180 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1030@tree1.tre"... 2019-10-09 09:45:41,180 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1032@tree1.tre"... 2019-10-09 09:45:41,180 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1034@tree1.tre"... 2019-10-09 09:45:41,180 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1037@tree3.tre"... 2019-10-09 09:45:41,181 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1242@tree2507.tre"... 2019-10-09 09:45:41,183 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1039@tree1.tre"... 2019-10-09 09:45:41,183 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1041@tree1.tre"... 2019-10-09 09:45:41,232 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1042@tree1.tre"... 2019-10-09 09:45:41,233 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2770@tree6417.tre"... 2019-10-09 09:45:41,233 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1045@tree1.tre"... 2019-10-09 09:45:41,234 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1046@tree1.tre"... 2019-10-09 09:45:41,235 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1047@tree1.tre"... 2019-10-09 09:45:41,236 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1048@tree1.tre"... 2019-10-09 09:45:41,237 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1053@tree1.tre"... 2019-10-09 09:45:41,240 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1054@tree1.tre"... 2019-10-09 09:45:41,245 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_328@tree1.tre"... 2019-10-09 09:45:41,248 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1056@Tr66754.tre"... 2019-10-09 09:45:41,253 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1058@tree1.tre"... 2019-10-09 09:45:41,254 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1062@tree2.tre"... 2019-10-09 09:45:41,255 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1064@tree1.tre"... 2019-10-09 09:45:41,256 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1067@tree1.tre"... 2019-10-09 09:45:41,260 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1068@tree2.tre"... 2019-10-09 09:45:41,261 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1070@tree1.tre"... 2019-10-09 09:45:41,262 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1072@Tr77370.tre"... 2019-10-09 09:45:41,266 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1075@tree1.tre"... 2019-10-09 09:45:41,267 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1079@tree3.tre"... 2019-10-09 09:45:41,267 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1088@Tr102832.tre"... 2019-10-09 09:45:41,267 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1085@tree1.tre"... 2019-10-09 09:45:41,268 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1090@Tr99739.tre"... 2019-10-09 09:45:41,269 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1086@tree1.tre"... 2019-10-09 09:45:41,269 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1073@tree1.tre"... 2019-10-09 09:45:41,270 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1092@Tr29847.tre"... 2019-10-09 09:45:41,270 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1105@Tr76755.tre"... 2019-10-09 09:45:41,271 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1106@tree1.tre"... 2019-10-09 09:45:41,271 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1112@tree1.tre"... 2019-10-09 09:45:41,272 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1101@tree3.tre"... 2019-10-09 09:45:41,273 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1114@tree1.tre"... 2019-10-09 09:45:41,273 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1100@tree1.tre"... 2019-10-09 09:45:41,275 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1098@tree1.tre"... 2019-10-09 09:45:41,277 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1117@tree2.tre"... 2019-10-09 09:45:41,283 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1118@tree1.tre"... 2019-10-09 09:45:41,283 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1120@tree2.tre"... 2019-10-09 09:45:41,283 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1124@tree1.tre"... 2019-10-09 09:45:41,283 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1125@tree1.tre"... 2019-10-09 09:45:41,284 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1093@tree2.tre"... 2019-10-09 09:45:41,287 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1132@tree2.tre"... 2019-10-09 09:45:41,288 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1130@tree1.tre"... 2019-10-09 09:45:41,288 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1134@tree2.tre"... 2019-10-09 09:45:41,292 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1135@tree4.tre"... 2019-10-09 09:45:41,294 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1138@Tr89262.tre"... 2019-10-09 09:45:41,294 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1139@Tr97436.tre"... 2019-10-09 09:45:41,294 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1140@Tr103257.tre"... 2019-10-09 09:45:41,295 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1141@Tr88900.tre"... 2019-10-09 09:45:41,295 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1142@Tr91759.tre"... 2019-10-09 09:45:41,295 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1147@tree1.tre"... 2019-10-09 09:45:41,297 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1059@tree1.tre"... 2019-10-09 09:45:41,299 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1150@tree1.tre"... 2019-10-09 09:45:41,300 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1159@tree1.tre"... 2019-10-09 09:45:41,300 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1161@tree1.tre"... 2019-10-09 09:45:41,302 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1162@tree1.tre"... 2019-10-09 09:45:41,302 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_155@tree780.tre"... 2019-10-09 09:45:41,303 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1164@tree2.tre"... 2019-10-09 09:45:41,307 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1165@tree1.tre"... 2019-10-09 09:45:41,307 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1167@tree2.tre"... 2019-10-09 09:45:41,307 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1174@tree3.tre"... 2019-10-09 09:45:41,311 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1175@tree1.tre"... 2019-10-09 09:45:41,312 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1176@tree1.tre"... 2019-10-09 09:45:41,314 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_2089@tree4326.tre"... 2019-10-09 09:45:41,314 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1182@Tr43256.tre"... 2019-10-09 09:45:41,314 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1184@tree1.tre"... 2019-10-09 09:45:41,316 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1185@tree1.tre"... 2019-10-09 09:45:41,317 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1198@Tr97555.tre"... 2019-10-09 09:45:41,317 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1198@Tr97554.tre"... 2019-10-09 09:45:41,318 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1209@Tr96307.tre"... 2019-10-09 09:45:41,319 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1208@Tr99854.tre"... 2019-10-09 09:45:41,319 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1212@tree12.tre"... 2019-10-09 09:45:41,320 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1215@tree1.tre"... 2019-10-09 09:45:41,322 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1215@tree2.tre"... 2019-10-09 09:45:41,325 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1216@tree1.tre"... 2019-10-09 09:45:41,325 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_303@Tr62284.tre"... 2019-10-09 09:45:41,331 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_607@Tr25497.tre"... 2019-10-09 09:45:41,332 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_295@tree203.tre"... 2019-10-09 09:45:41,334 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1050@tree1.tre"... 2019-10-09 09:45:41,375 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1864@tree3763.tre"... 2019-10-09 09:45:41,376 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_1902@tree3879.tre"... 2019-10-09 09:45:41,381 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_999@tree1940.tre"... 2019-10-09 09:45:41,388 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/pg_154@tree782.tre"... 2019-10-09 09:45:41,389 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1233@tree1.tre"... 2019-10-09 09:45:41,391 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1234@tree1.tre"... 2019-10-09 09:45:41,392 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1235@tree1.tre"... 2019-10-09 09:45:41,392 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1236@tree1.tre"... 2019-10-09 09:45:41,395 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1229@tree1.tre"... 2019-10-09 09:45:41,396 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1239@tree1.tre"... 2019-10-09 09:45:41,397 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1241@Tr103639.tre"... 2019-10-09 09:45:41,398 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1246@Tr108958.tre"... 2019-10-09 09:45:41,398 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1245@Tr87460.tre"... 2019-10-09 09:45:41,400 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1248@Tr92236.tre"... 2019-10-09 09:45:41,401 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1249@Tr93670.tre"... 2019-10-09 09:45:41,402 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_311@tree1.tre"... 2019-10-09 09:45:41,522 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1247@Tr74849.tre"... 2019-10-09 09:45:41,526 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1253@tree1.tre"... 2019-10-09 09:45:41,526 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1273@Tr89136.tre"... 2019-10-09 09:45:41,527 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1273@Tr89135.tre"... 2019-10-09 09:45:41,529 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1278@tree1.tre"... 2019-10-09 09:45:41,529 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1278@tree2.tre"... 2019-10-09 09:45:41,530 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1280@Tr2912.tre"... 2019-10-09 09:45:41,530 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1281@Tr788.tre"... 2019-10-09 09:45:41,531 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1286@tree1.tre"... 2019-10-09 09:45:41,531 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1313@tree1.tre"... 2019-10-09 09:45:41,533 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1318@tree1.tre"... 2019-10-09 09:45:41,534 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1315@tree1.tre"... 2019-10-09 09:45:41,535 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1325@Tr87612.tre"... 2019-10-09 09:45:41,535 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1326@Tr90799.tre"... 2019-10-09 09:45:41,536 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1334@Tr2234.tre"... 2019-10-09 09:45:41,536 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1334@Tr2235.tre"... 2019-10-09 09:45:41,536 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1334@Tr2236.tre"... 2019-10-09 09:45:41,536 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1334@Tr2237.tre"... 2019-10-09 09:45:41,536 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1335@Tr55332.tre"... 2019-10-09 09:45:41,537 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1338@Tr76168.tre"... 2019-10-09 09:45:41,537 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1339@Tr105276.tre"... 2019-10-09 09:45:41,538 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1340@Tr92106.tre"... 2019-10-09 09:45:41,538 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1342@tree1.tre"... 2019-10-09 09:45:41,539 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1343@tree7.tre"... 2019-10-09 09:45:41,539 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1350@Tr105258.tre"... 2019-10-09 09:45:41,540 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1351@Tr61887.tre"... 2019-10-09 09:45:41,540 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1353@Tr111812.tre"... 2019-10-09 09:45:41,540 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1354@tree1.tre"... 2019-10-09 09:45:41,541 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1360@Tr93591.tre"... 2019-10-09 09:45:41,542 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1362@Tr96006.tre"... 2019-10-09 09:45:41,543 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1363@Tr110586.tre"... 2019-10-09 09:45:41,544 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1363@Tr110589.tre"... 2019-10-09 09:45:41,544 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1366@Tr98763.tre"... 2019-10-09 09:45:41,551 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1368@Tr111745.tre"... 2019-10-09 09:45:41,551 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1370@tree1.tre"... 2019-10-09 09:45:41,551 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1370@tree2.tre"... 2019-10-09 09:45:41,551 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1375@Tr86809.tre"... 2019-10-09 09:45:41,552 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1375@Tr86807.tre"... 2019-10-09 09:45:41,552 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1378@tree1.tre"... 2019-10-09 09:45:41,552 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1380@tree1.tre"... 2019-10-09 09:45:41,554 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1384@tree1.tre"... 2019-10-09 09:45:41,556 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1386@tree1.tre"... 2019-10-09 09:45:41,556 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1345@Tr109614.tre"... 2019-10-09 09:45:41,557 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1390@tree1.tre"... 2019-10-09 09:45:41,559 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1393@tree8.tre"... 2019-10-09 09:45:41,562 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1394@tree1.tre"... 2019-10-09 09:45:41,562 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1395@Tr96911.tre"... 2019-10-09 09:45:41,564 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1421@tree1.tre"... 2019-10-09 09:45:41,564 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1421@tree2.tre"... 2019-10-09 09:45:41,565 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1421@tree3.tre"... 2019-10-09 09:45:41,565 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1423@Tr97439.tre"... 2019-10-09 09:45:41,566 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1429@Tr55911.tre"... 2019-10-09 09:45:41,566 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1328@Tr107194.tre"... 2019-10-09 09:45:41,566 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1432@tree2.tre"... 2019-10-09 09:45:41,566 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1442@tree1.tre"... 2019-10-09 09:45:41,566 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1443@tree1.tre"... 2019-10-09 09:45:41,567 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1444@tree1.tre"... 2019-10-09 09:45:41,567 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1446@tree1.tre"... 2019-10-09 09:45:41,567 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1314@Tr5182.tre"... 2019-10-09 09:45:41,568 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1431@Tr55921.tre"... 2019-10-09 09:45:41,569 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1430@Tr55885.tre"... 2019-10-09 09:45:41,569 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1301@Tr27546.tre"... 2019-10-09 09:45:41,570 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1427@Tr55249.tre"... 2019-10-09 09:45:41,570 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1268@tree5.tre"... 2019-10-09 09:45:41,572 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1445@Tr80174.tre"... 2019-10-09 09:45:41,573 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1447@Tr80255.tre"... 2019-10-09 09:45:41,573 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1409@Tr87541.tre"... 2019-10-09 09:45:41,576 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1389@Tr97256.tre"... 2019-10-09 09:45:41,576 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1391@Tr96262.tre"... 2019-10-09 09:45:41,582 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1388@Tr101831.tre"... 2019-10-09 09:45:41,583 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1344@Tr105486.tre"... 2019-10-09 09:45:41,585 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1336@Tr103781.tre"... 2019-10-09 09:45:41,586 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1327@Tr106359.tre"... 2019-10-09 09:45:41,586 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1448@Tr108836.tre"... 2019-10-09 09:45:41,587 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1449@Tr55330.tre"... 2019-10-09 09:45:41,588 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1452@tree1.tre"... 2019-10-09 09:45:41,588 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1454@tree1.tre"... 2019-10-09 09:45:41,589 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1456@tree1.tre"... 2019-10-09 09:45:41,590 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1459@Tr74507.tre"... 2019-10-09 09:45:41,590 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1461@Tr79340.tre"... 2019-10-09 09:45:41,590 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1291@tree1.tre"... 2019-10-09 09:45:41,591 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1401@Tr102060.tre"... 2019-10-09 09:45:41,591 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1397@tree1.tre"... 2019-10-09 09:45:41,591 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1405@Tr110606.tre"... 2019-10-09 09:45:41,592 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1462@Tr74579.tre"... 2019-10-09 09:45:41,593 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1406@Tr109588.tre"... 2019-10-09 09:45:41,594 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1463@Tr71674.tre"... 2019-10-09 09:45:41,594 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1463@Tr71670.tre"... 2019-10-09 09:45:41,594 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1464@Tr103429.tre"... 2019-10-09 09:45:41,595 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1407@Tr110818.tre"... 2019-10-09 09:45:41,595 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1408@Tr107089.tre"... 2019-10-09 09:45:41,595 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1408@Tr106909.tre"... 2019-10-09 09:45:41,596 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1411@Tr105655.tre"... 2019-10-09 09:45:41,596 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1410@Tr97099.tre"... 2019-10-09 09:45:41,596 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1416@Tr95511.tre"... 2019-10-09 09:45:41,596 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1417@Tr94055.tre"... 2019-10-09 09:45:41,604 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1413@Tr95891.tre"... 2019-10-09 09:45:41,604 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1414@Tr91920.tre"... 2019-10-09 09:45:41,606 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1465@Tr86888.tre"... 2019-10-09 09:45:41,608 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1433@Tr106415.tre"... 2019-10-09 09:45:41,608 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1466@Tr75272.tre"... 2019-10-09 09:45:41,609 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1467@Tr101085.tre"... 2019-10-09 09:45:41,609 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1468@Tr100263.tre"... 2019-10-09 09:45:41,609 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1468@Tr100261.tre"... 2019-10-09 09:45:41,610 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1468@Tr100262.tre"... 2019-10-09 09:45:41,610 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1469@Tr108340.tre"... 2019-10-09 09:45:41,611 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1471@Tr31125.tre"... 2019-10-09 09:45:41,611 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1471@Tr31127.tre"... 2019-10-09 09:45:41,611 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1471@Tr31126.tre"... 2019-10-09 09:45:41,612 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1472@Tr76233.tre"... 2019-10-09 09:45:41,613 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1472@Tr76232.tre"... 2019-10-09 09:45:41,614 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1476@Tr79968.tre"... 2019-10-09 09:45:41,614 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1477@Tr25846.tre"... 2019-10-09 09:45:41,614 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1473@Tr98329.tre"... 2019-10-09 09:45:41,615 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1478@Tr100017.tre"... 2019-10-09 09:45:41,616 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1483@Tr797.tre"... 2019-10-09 09:45:41,616 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1489@tree1.tre"... 2019-10-09 09:45:41,619 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1489@tree2.tre"... 2019-10-09 09:45:41,628 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1489@tree4.tre"... 2019-10-09 09:45:41,629 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1490@tree1.tre"... 2019-10-09 09:45:41,630 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1491@tree1.tre"... 2019-10-09 09:45:41,630 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1493@Tr5854.tre"... 2019-10-09 09:45:41,631 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1495@tree1.tre"... 2019-10-09 09:45:41,631 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1496@tree1.tre"... 2019-10-09 09:45:41,632 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1498@tree1.tre"... 2019-10-09 09:45:41,632 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1499@Tr109204.tre"... 2019-10-09 09:45:41,632 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1501@tree1.tre"... 2019-10-09 09:45:41,632 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1503@Tr55253.tre"... 2019-10-09 09:45:41,633 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1504@Tr74597.tre"... 2019-10-09 09:45:41,633 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1510@Tr55267.tre"... 2019-10-09 09:45:41,634 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1512@Tr55545.tre"... 2019-10-09 09:45:41,634 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1513@Tr55903.tre"... 2019-10-09 09:45:41,635 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1516@Tr55113.tre"... 2019-10-09 09:45:41,635 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1518@Tr59010.tre"... 2019-10-09 09:45:41,635 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1524@Tr6135.tre"... 2019-10-09 09:45:41,636 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1524@Tr6600.tre"... 2019-10-09 09:45:41,636 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1525@Tr52468.tre"... 2019-10-09 09:45:41,637 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1527@tree1.tre"... 2019-10-09 09:45:41,637 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1528@tree1.tre"... 2019-10-09 09:45:41,640 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1530@Tr68066.tre"... 2019-10-09 09:45:41,641 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1532@Tr64115.tre"... 2019-10-09 09:45:41,642 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1532@Tr64117.tre"... 2019-10-09 09:45:41,643 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1537@tree1.tre"... 2019-10-09 09:45:41,645 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1543@tree2.tre"... 2019-10-09 09:45:41,645 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1544@tree1.tre"... 2019-10-09 09:45:41,646 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1545@tree1.tre"... 2019-10-09 09:45:41,647 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1546@tree1.tre"... 2019-10-09 09:45:41,649 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1548@Tr107329.tre"... 2019-10-09 09:45:41,650 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1550@Tr59565.tre"... 2019-10-09 09:45:41,651 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1551@Tr78321.tre"... 2019-10-09 09:45:41,652 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1552@tree1.tre"... 2019-10-09 09:45:41,652 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1553@tree1.tre"... 2019-10-09 09:45:41,653 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1555@tree1.tre"... 2019-10-09 09:45:41,654 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1559@tree1.tre"... 2019-10-09 09:45:41,654 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1560@tree2.tre"... 2019-10-09 09:45:41,662 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1562@Tr105990.tre"... 2019-10-09 09:45:41,662 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1566@tree1.tre"... 2019-10-09 09:45:41,662 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1554@tree1.tre"... 2019-10-09 09:45:41,662 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1568@tree1.tre"... 2019-10-09 09:45:41,662 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1571@tree2.tre"... 2019-10-09 09:45:41,664 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1575@tree1.tre"... 2019-10-09 09:45:41,664 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1507@tree1.tre"... 2019-10-09 09:45:41,665 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1574@tree1.tre"... 2019-10-09 09:45:41,665 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1104@tree3.tre"... 2019-10-09 09:45:41,668 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1584@tree1.tre"... 2019-10-09 09:45:41,669 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1587@tree1.tre"... 2019-10-09 09:45:41,669 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1588@tree1.tre"... 2019-10-09 09:45:41,669 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1589@tree1.tre"... 2019-10-09 09:45:41,670 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1590@tree1.tre"... 2019-10-09 09:45:41,677 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1581@tree1.tre"... 2019-10-09 09:45:41,677 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1572@tree1.tre"... 2019-10-09 09:45:41,678 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1579@tree1.tre"... 2019-10-09 09:45:41,678 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1601@tree1.tre"... 2019-10-09 09:45:41,678 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1602@tree1.tre"... 2019-10-09 09:45:41,678 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1603@tree1.tre"... 2019-10-09 09:45:41,678 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1604@tree1.tre"... 2019-10-09 09:45:41,679 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1592@tree1.tre"... 2019-10-09 09:45:41,848 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1605@tree1.tre"... 2019-10-09 09:45:41,848 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1622@Tr85362.tre"... 2019-10-09 09:45:41,849 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1623@Tr87940.tre"... 2019-10-09 09:45:41,851 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1624@Tr85668.tre"... 2019-10-09 09:45:41,862 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1625@Tr87128.tre"... 2019-10-09 09:45:41,862 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1627@Tr46103.tre"... 2019-10-09 09:45:41,863 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1631@Tr75792.tre"... 2019-10-09 09:45:41,865 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1636@tree1.tre"... 2019-10-09 09:45:41,865 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1638@tree1.tre"... 2019-10-09 09:45:41,865 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1639@tree1.tre"... 2019-10-09 09:45:41,865 INFO [default] reading "/home/opentree/synth/in_progress_tree_builds/bumpedopentree11.4/exemplified_phylo/ot_1640@tree1.tre"... 2019-10-09 09:45:41,867 INFO [default] reading 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This alias will be removed in future versions. Use ConfigParser directly instead. p = configparser.SafeConfigParser() bin/gen_attributes.py:54: DeprecationWarning: The SafeConfigParser class has been renamed to ConfigParser in Python 3.2. This alias will be removed in future versions. Use ConfigParser directly instead. p = configparser.SafeConfigParser() bin/gen_attributes.py:54: DeprecationWarning: The SafeConfigParser class has been renamed to ConfigParser in Python 3.2. This alias will be removed in future versions. Use ConfigParser directly instead. p = configparser.SafeConfigParser()