Comparing inputs

opentree12.3 ott (3.2draft9) != opentree13.4 ott (3.3draft1)

Collections: no differences

Flags: no differences

Input trees:

1216 in opentree12.3; 1239 in opentree13.4

in common = 1215

in opentree12.3 but not opentree13.4 = 1

Input trees in opentree12.3 but not opentree13.4:

ot_656@tree2

in opentree13.4 but not opentree12.3 = 24

Input trees in opentree13.4 but not opentree12.3:

ot_2018@tree9, pg_55@tree5864, ot_1966@tree5, ot_1984@tree1, ot_1963@tree1, ot_1877@tree3, ot_1969@tree1, ot_510@tree1, ot_2018@tree8, ot_742@tree1, ot_2005@tree1, ot_2001@tree1, ot_2000@tree1, ot_1160@tree1, ot_1967@tree1, ot_2013@tree8, ot_1987@tree1, ot_1965@tree1, ot_2014@tree2, ot_1973@tree2, pg_1807@tree3657, ot_301@tree1, ot_1972@tree1, ot_1732@tree1

Non-empty trees:

1201 in opentree12.3; 1223 in opentree13.4

in common = 1200

in opentree12.3 but not opentree13.4 = 1

Non-empty trees in opentree12.3 but not opentree13.4:

ot_656@tree2.tre

in opentree13.4 but not opentree12.3 = 23

Non-empty trees in opentree13.4 but not opentree12.3:

pg_1807@tree3657.tre, ot_1160@tree1.tre, ot_2005@tree1.tre, ot_1973@tree2.tre, pg_55@tree5864.tre, ot_1987@tree1.tre, ot_1969@tree1.tre, ot_2018@tree9.tre, ot_510@tree1.tre, ot_1967@tree1.tre, ot_1972@tree1.tre, ot_2013@tree8.tre, ot_742@tree1.tre, ot_1965@tree1.tre, ot_1963@tree1.tre, ot_2001@tree1.tre, ot_1984@tree1.tre, ot_2000@tree1.tre, ot_2018@tree8.tre, ot_1732@tree1.tre, ot_1877@tree3.tre, ot_2014@tree2.tre, ot_1966@tree5.tre

Comparing subproblems

Subproblems:

9889 in opentree12.3; 10234 in opentree13.4

in common = 9847

in opentree12.3 but not opentree13.4 = 42

Subproblems in opentree12.3 but not opentree13.4:

ott928727.tre, ott734484.tre, ott118029.tre, ott572696.tre, ott336135.tre, ott1013132.tre, ott114139.tre, ott254162.tre, ott1036182.tre, ott989417.tre, ott114359.tre, ott239848.tre, ott357617.tre, ott504591.tre, ott404352.tre, ott700573.tre, ott764193.tre, ott7070002.tre, ott573821.tre, ott189957.tre, ott764195.tre, ott185359.tre, ott98462.tre, ott1081208.tre, ott155642.tre, ott451821.tre, ott652142.tre, ott174267.tre, ott693468.tre, ott245332.tre, ott896265.tre, ott53072.tre, ott5231281.tre, ott291552.tre, ott98463.tre, ott565053.tre, ott59965.tre, ott1012719.tre, ott307539.tre, ott502427.tre, ott850514.tre, ott347472.tre

in opentree13.4 but not opentree12.3 = 387

Subproblems in opentree13.4 but not opentree12.3:

ott696036.tre, ott677793.tre, ott635878.tre, ott48290.tre, ott3619730.tre, ott730284.tre, ott2708.tre, ott1021847.tre, ott939971.tre, ott373385.tre, ott510385.tre, ott141917.tre, ott950252.tre, ott206075.tre, ott143511.tre, ott776624.tre, ott735736.tre, ott855286.tre, ott554784.tre, ott1039944.tre, ott200606.tre, ott624231.tre, ott48280.tre, ott58009.tre, ott1028337.tre, ott21512.tre, ott1068057.tre, ott963286.tre, ott184398.tre, ott840527.tre, ott695740.tre, ott54879.tre, ott1000787.tre, ott205908.tre, ott234477.tre, ott435268.tre, ott1057418.tre, ott1089029.tre, ott77765.tre, ott114125.tre, ott80092.tre, ott4235192.tre, ott384810.tre, ott2959563.tre, ott484430.tre, ott742128.tre, ott1039058.tre, ott916282.tre, ott750671.tre, ott725020.tre, ott3617930.tre, ott252993.tre, ott672336.tre, ott3620674.tre, ott3620198.tre, ott387681.tre, ott532108.tre, ott186193.tre, ott45041.tre, ott980054.tre, ott3620328.tre, ott3238.tre, ott671237.tre, ott729848.tre, ott53081.tre, ott1054564.tre, ott442097.tre, ott105878.tre, ott3619745.tre, ott269831.tre, ott1039919.tre, ott570084.tre, ott221528.tre, ott7146811.tre, ott436037.tre, ott860337.tre, ott3620193.tre, ott87878.tre, ott930335.tre, ott916436.tre, ott572001.tre, ott1079094.tre, ott784682.tre, ott961098.tre, ott556793.tre, ott774831.tre, ott414397.tre, ott154507.tre, ott68195.tre, ott1012402.tre, ott346406.tre, ott991172.tre, ott401862.tre, ott643848.tre, ott269823.tre, ott45657.tre, ott106367.tre, ott3617932.tre, ott928751.tre, ott380730.tre, ott277158.tre, ott31513.tre, ott444998.tre, ott199716.tre, ott873050.tre, ott1000619.tre, ott481585.tre, ott911816.tre, ott382522.tre, ott112778.tre, ott747321.tre, ott554793.tre, ott768056.tre, ott1083299.tre, ott127425.tre, ott734514.tre, ott31502.tre, ott680854.tre, ott495342.tre, ott54893.tre, ott1023234.tre, ott572958.tre, ott840521.tre, ott112776.tre, ott202165.tre, ott283384.tre, ott196670.tre, ott4975273.tre, ott553820.tre, ott943455.tre, ott5844840.tre, ott451847.tre, ott467838.tre, ott694016.tre, ott729898.tre, ott331598.tre, ott211560.tre, ott961886.tre, ott266287.tre, ott324378.tre, ott72615.tre, ott106360.tre, ott414388.tre, ott692247.tre, ott520422.tre, ott258756.tre, ott940172.tre, ott142965.tre, ott1059121.tre, ott415515.tre, ott168784.tre, ott976092.tre, ott856189.tre, ott4233628.tre, ott1021520.tre, ott3617941.tre, ott527568.tre, ott299072.tre, ott190219.tre, ott680375.tre, ott186172.tre, ott562905.tre, ott715952.tre, ott103936.tre, ott951062.tre, ott1200.tre, ott506349.tre, ott175015.tre, ott61938.tre, ott404351.tre, ott411069.tre, ott1007792.tre, ott329968.tre, ott229466.tre, ott228327.tre, ott27667.tre, ott532311.tre, ott805120.tre, ott4234670.tre, ott622247.tre, ott719425.tre, ott574291.tre, ott380734.tre, ott487104.tre, ott304796.tre, ott21505.tre, ott470915.tre, ott800432.tre, ott3625889.tre, ott5859858.tre, ott633052.tre, ott498526.tre, ott391477.tre, ott2949376.tre, ott799511.tre, ott4975126.tre, ott487105.tre, ott386355.tre, ott112772.tre, ott382515.tre, ott890637.tre, ott626098.tre, ott5835144.tre, ott692256.tre, ott625556.tre, ott464157.tre, ott803112.tre, ott270831.tre, ott864397.tre, ott679927.tre, ott4948197.tre, ott28566.tre, ott683525.tre, ott607783.tre, ott923330.tre, ott306734.tre, ott907708.tre, ott581035.tre, ott1055759.tre, ott274177.tre, ott772221.tre, ott1019349.tre, ott165148.tre, ott199023.tre, ott234475.tre, ott354846.tre, ott716176.tre, ott574236.tre, ott940018.tre, ott1083.tre, ott1020553.tre, ott358154.tre, ott918183.tre, ott581043.tre, ott784741.tre, ott966721.tre, ott62677.tre, ott652134.tre, ott190090.tre, ott5653672.tre, ott770748.tre, ott59970.tre, ott1092620.tre, ott654632.tre, ott777178.tre, ott45674.tre, ott16685.tre, ott858543.tre, ott265983.tre, ott790280.tre, ott717442.tre, ott3625703.tre, ott497500.tre, ott911557.tre, ott638687.tre, ott441305.tre, ott674237.tre, ott5852548.tre, ott331327.tre, ott729312.tre, ott378770.tre, ott453344.tre, ott491672.tre, ott214194.tre, ott775979.tre, ott112783.tre, ott412467.tre, ott3619071.tre, ott201910.tre, ott929882.tre, ott312840.tre, ott4133656.tre, ott791392.tre, ott294911.tre, ott1012718.tre, ott498525.tre, ott445765.tre, ott405938.tre, ott283918.tre, ott77667.tre, ott427881.tre, ott639646.tre, ott901605.tre, ott165721.tre, ott783063.tre, ott1014120.tre, ott635875.tre, ott4235257.tre, ott615800.tre, ott451937.tre, ott2948380.tre, ott905803.tre, ott1091968.tre, ott414583.tre, ott571991.tre, ott1007783.tre, ott916450.tre, ott1043418.tre, ott1012073.tre, ott1080055.tre, ott401602.tre, ott281326.tre, ott16678.tre, ott401853.tre, ott977966.tre, ott4233946.tre, ott291524.tre, ott54890.tre, ott880717.tre, ott775978.tre, ott630713.tre, ott306720.tre, ott167949.tre, ott607841.tre, ott566945.tre, ott109298.tre, ott977974.tre, ott128231.tre, ott510392.tre, ott433685.tre, ott643656.tre, ott87879.tre, ott154505.tre, ott479403.tre, ott911579.tre, ott127182.tre, ott1039942.tre, ott463546.tre, ott1018584.tre, ott812173.tre, ott484896.tre, ott382513.tre, ott627466.tre, ott99034.tre, ott972843.tre, ott96972.tre, ott833322.tre, ott31505.tre, ott80539.tre, ott594327.tre, ott380742.tre, ott175028.tre, ott201933.tre, ott515428.tre, ott1091049.tre, ott200608.tre, ott7152205.tre, ott160126.tre, ott1020547.tre, ott78416.tre, ott16680.tre, ott190233.tre, ott3148264.tre, ott317404.tre, ott465081.tre, ott308593.tre, ott445003.tre, ott554794.tre, ott4975162.tre, ott1089019.tre, ott1018592.tre, ott144693.tre, ott57740.tre, ott142962.tre, ott211563.tre, ott1040184.tre, ott304793.tre, ott45038.tre, ott840664.tre, ott654633.tre, ott502460.tre, ott1031587.tre, ott506702.tre, ott200609.tre, ott106371.tre, ott636608.tre, ott7146796.tre, ott5844954.tre, ott3625890.tre, ott390704.tre, ott530237.tre, ott985696.tre, ott845220.tre, ott528970.tre, ott683526.tre, ott905799.tre, ott99499.tre

Subproblem size summary:

runtrivialsmallmedlarge
opentree12.34213495970512
opentree13.44307515276213

Comparing broken taxa

Broken taxa:

5665 in opentree12.3; 5883 in opentree13.4

in common = 5664

in opentree12.3 but not opentree13.4 = 1

Broken taxa in opentree12.3 but not opentree13.4:

ott1040184

in opentree13.4 but not opentree12.3 = 219

Broken taxa in opentree13.4 but not opentree12.3:

ott735730, ott489708, ott283044, ott1083300, ott291553, ott7146718, ott1081208, ott380155, ott713867, ott336137, ott1017782, ott461877, ott406395, ott436034, ott4975307, ott291550, ott683523, ott860333, ott643836, ott96974, ott404352, ott35964, ott17586, ott200610, ott816078, ott200604, ott339300, ott1023050, ott929883, ott1043422, ott834691, ott972839, ott362606, ott2945944, ott242291, ott579735, ott46695, ott1019949, ott671238, ott464149, ott915356, ott291551, ott441372, ott192007, ott997456, ott729305, ott3546968, ott991177, ott102565, ott200521, ott573821, ott846659, ott228319, ott774832, ott468632, ott7152350, ott17584, ott7720259, ott896265, ott16671, ott147158, ott566116, ott331336, ott591709, ott807504, ott968716, ott678996, ott98462, ott923326, ott1071500, ott1028339, ott725599, ott1012714, ott672337, ott59965, ott390718, ott990605, ott538128, ott311614, ott764195, ott98463, ott193704, ott466491, ott487095, ott789213, ott174267, ott683530, ott719277, ott523271, ott266513, ott549770, ott189957, ott998828, ott161874, ott681, ott1078791, ott114359, ott206401, ott735731, ott145082, ott734484, ott765634, ott267668, ott7070002, ott1012720, ott336135, ott911809, ott145077, ott53072, ott682536, ott735742, ott59964, ott566095, ott307539, ott3546445, ott291642, ott161734, ott775981, ott291552, ott1013132, ott745192, ott435283, ott155642, ott445769, ott1015803, ott553824, ott579532, ott330832, ott633787, ott683520, ott254162, ott831465, ott830570, ott345725, ott1047430, ott7720253, ott474394, ott1004644, ott725311, ott692260, ott905805, ott1012717, ott572696, ott358760, ott722563, ott390978, ott157390, ott200614, ott387307, ott216518, ott226906, ott357617, ott549863, ott114139, ott347472, ott7152018, ott764192, ott747323, ott4947703, ott442106, ott461140, ott299075, ott729001, ott398818, ott193709, ott336226, ott959821, ott504582, ott1083310, ott700573, ott1041421, ott854980, ott99276, ott106108, ott276189, ott504591, ott1047421, ott7720271, ott910090, ott123520, ott546986, ott771906, ott463448, ott581655, ott249086, ott502427, ott942872, ott94767, ott118029, ott456707, ott683529, ott1026957, ott548850, ott989417, ott4234327, ott643842, ott1012719, ott451821, ott1036182, ott515995, ott147162, ott868256, ott54886, ott3618031, ott824626, ott607786, ott7146729, ott351931, ott270822, ott401860, ott184403, ott245332, ott554791, ott3619054, ott6155586, ott253020, ott729008, ott736556, ott782122

Broken taxon list (CSV)

Broken taxa by input tree report

Synthetic tree summary

statisticopentree12.3opentree13.4difference
total tips23919162392042126
taxonomy tips23041762298014-6162
phylogeny tips87740940286288
forking nodes80048839843936
broken taxa56655883218
Summary Table for release notes