Propinquity output documentation. The top-level docs are here.
The phylo_snapshot directory copies of the NexSON files for each tree that is a phylogenetic input.
Next step: Removing nodes from the phylogenetic inputs because of problems associated with the mapping of OTUs to the OTTaxonomy. See ../cleaned_phylo/index.html for details about that step.
Results:
| Link to NexSON | git object SHA of for source of NexSON |
|---|---|
| tree_ot_895@tree2.json | e931e59b1685565a2be1890a761b3443af1ae1f6 |
| tree_ot_519@tree2.json | 170e4cc8e87b5016ee19cc5b661f7457efb3c1b3 |
| tree_ot_519@Tr88326.json | 170e4cc8e87b5016ee19cc5b661f7457efb3c1b3 |
| tree_ot_896@tree1.json | b84115368ac318f448a00236057e681591e87e23 |
| tree_pg_1951@tree3975.json | 3ca1823bfbf173534a4c01f78c35ff335b56d8f0 |
| tree_ot_930@tree3.json | 507902ceeaa1c054568a54e54f6853c6bad60c61 |
| tree_pg_1951@tree3974.json | 3ca1823bfbf173534a4c01f78c35ff335b56d8f0 |
| tree_ot_932@tree6.json | 69d01b8f78eec2f665ff44001c2001f327175660 |
| tree_ot_942@Tr94692.json | f893d5a8dbaf194a93d6f7f481bcc60645cbe771 |
| tree_ot_929@tree1.json | 6bbfc27b260375007326c653280d50f26f51c7f9 |
| tree_pg_1786@tree6257.json | 3fba6fcc8ecaa5d1e21a916becacf1fe6b526d15 |
| tree_ot_924@Tr97534.json | 53996777db326aadb0d6dc91b09b96f40d68a1aa |
| tree_pg_1761@tree6151.json | b14a2029ef4ed4fdecb6ecdbacd0364112e59015 |
| tree_pg_2445@tree5206.json | f6753b822ddf8c94e4c8737a8b0b24e576061ae3 |
| tree_ot_938@tree1.json | 4401ac323d77ddc1d384918feab2e2f02ecd46e8 |
| tree_pg_1785@tree6248.json | 2e85d679151214e34849767562b3c79feec3f4e5 |
| tree_ot_714@tree2.json | 362ac222a686f38664ed48c1bfbdf5cf565b2667 |
| tree_ot_944@tree1.json | 1b0803ebb96532b75971635f0dcf2ce55052532e |
| tree_pg_1788@tree6534.json | fa1a0f83472cd72ad3a2d7bc26129b4b17fd87bb |
| tree_ot_957@tree1.json | ef85f35bef620599f33ee73a3d88f0a38924986d |
| tree_ot_729@Tr90969.json | 4d9ce907b24ecd1c579bd0848c63c9ea413b34a9 |
| tree_ot_949@tree1.json | d6ed6a9c836691f327cba246e7eaf601bd846ff2 |
| tree_ot_933@tree2.json | 4801fe89cdb6f2044a602880d6e3d9f768de2b29 |
| tree_ot_947@tree1.json | c3b06d48449d079699ce44a1e712984b5282d103 |
| tree_ot_954@tree1.json | 42b5233046ee97915f3fa4e8b2dc56fe3a6a8f60 |
| tree_ot_947@tree3.json | c3b06d48449d079699ce44a1e712984b5282d103 |
| tree_ot_981@tree1.json | b38fa1cfb6ec6949361ec54384912fa0050de330 |
| tree_ot_947@tree2.json | c3b06d48449d079699ce44a1e712984b5282d103 |
| tree_pg_1947@tree3965.json | fc03a64eae5ebb7fb7efa09f50984ddcbd8f32aa |
| tree_ot_925@tree1.json | 609a6aa116a1bb7f0d1849afb48c7cd27e39b28a |
| tree_ot_960@tree1.json | f673fe0fbf949a80c3b1b4491286c0f983b7615e |
| tree_ot_956@tree1.json | 2f40cbeeaa9b04b7658457e134d847deda8caa29 |
| tree_ot_900@tree1.json | 8a86ed05812049cc7b82958786535f6a865b79e6 |
| tree_ot_984@tree1.json | 65cd41bc8142e1f56c5a5ecab50d145f370198dc |
| tree_ot_985@tree1.json | 2d22c87a5f31247b60b280868853b31357d6efd5 |
| tree_ot_983@tree1.json | 790faceef441cb2e68eaddddf091ec214bca8f79 |
| tree_ot_898@tree1.json | 0c56a82ceeb3d203c5a24bb4478fedd12fb59e2f |
| tree_ot_898@tree3.json | 0c56a82ceeb3d203c5a24bb4478fedd12fb59e2f |
| tree_ot_898@tree2.json | 0c56a82ceeb3d203c5a24bb4478fedd12fb59e2f |
| tree_ot_982@tree4.json | c9cbc32a7cb7e77705f7f58929d3dbdb6f7d8860 |
| tree_ot_989@tree1.json | 9f55d9ddd294b2bfb078e30c013a28af5789c8fa |
| tree_ot_990@tree2.json | 45b02c5c41f2a32b263cc306274115759cf78391 |
| tree_ot_964@tree2.json | de8f285f0e5807567dd8e2e94201fce8545aafaf |
| tree_ot_965@tree1.json | 170657ced4c8f20fcd82cb20561fbac86c059d8c |
| tree_ot_523@tree1.json | 921083e19366ca3b31e18e7673fd0831fb8301cc |
| tree_ot_771@tree1.json | fae147e6d33357351d321a158e07ebbe2851d7a4 |
| tree_ot_948@tree2.json | e8925ae0648e00828749c3ff3ccbfa1626526b15 |
| tree_ot_951@tree1.json | 0f263a51e5810e27b991d2ce9d2c073cd2ddd831 |
| tree_ot_935@tree2.json | 826c6d919c4ab979ebe2f1bbcd2050988dd6deaf |
| tree_ot_934@tree1.json | 0da40647110f24eaea57e12a40c7cf5db17416e3 |
| tree_ot_613@tree1.json | 2294191925f7a9c983061737959f634172ecec4d |
| tree_ot_955@tree1.json | 40ff7e8e4f3ef1352a89e38ac3df8eee124ed001 |
| tree_ot_952@tree1.json | b7ad670ccbda38a78b33cd9d03ecbb51e2d30a6b |
| tree_ot_987@tree1.json | b63a7f736083f55d9f2d4297521822b29748fa64 |
| tree_ot_988@tree1.json | 11265f829e1e28b7aaa11c7ef4985db4e7f23269 |
| tree_pg_2651@tree6177.json | def92ec8ef91155a5b6aebee0dd1857a56807dbe |
| tree_ot_1078@tree1.json | 4093c76840eb36456d0c9e72fbe766b0c367ee8b |
| tree_ot_1091@tree1.json | 35ccab069d1a69d84f01d306e4cd3ba86b0df02b |
| tree_pg_793@tree5659.json | 5f2599f6afe08e713230082036bfbcc8a32717bc |
| tree_ot_490@Tr70734.json | 8d24bc439a0dd4ae8ec1fe10a87cce4cbb17bb5b |
| tree_pg_406@tree509.json | a0d9073c035b5095ef022bd011fd867e6ecac436 |
| tree_pg_401@tree5569.json | c9ca8fda57a962f9eb5a2deb26bc2e602856b9bf |
| tree_pg_2466@tree5304.json | 676b0c9c072b3624af44666a67d3b96bb5851124 |
| tree_ot_497@Tr4479.json | 5307a9e34548b9bb00c845bd21b2ca4c4e7ec37d |
| tree_pg_432@tree546.json | aaf80c5a9ad633b674e767c8f7426bd46cb61ddf |
| tree_ot_372@Tr60567.json | 4c67c1457500c5fbfabeea39248812432420a8fa |
| tree_pg_300@tree217.json | be777e311c163e5b4b35af93206a08016bbcfd47 |
| tree_ot_408@Tr65494.json | 78b9b0a17bd483520f58f5b83b6503f66cb5a80d |
| tree_pg_745@tree1360.json | 86d906129ff1a10e8e18c2b62b655487a421c6da |
| tree_pg_1753@tree3531.json | e7129f2c96bb8517011c41b50b6e98efbba38c08 |
| tree_pg_518@tree733.json | d80cbe52b0ce882efa874ff4cd63cb1ecc750be6 |
| tree_pg_531@tree763.json | f01ea75ffc9820e91a868cb7a703f683a05939c3 |
| tree_pg_485@tree651.json | d13e426c45a53d9cf529410a48825ab3c721142d |
| tree_pg_381@tree448.json | 04223233ba226b8a7975db9393e9b67cd4005c18 |
| tree_ot_393@Tr72538.json | f92d2e9a86a68320425a61a4c76942e7026a5ac0 |
| tree_pg_2486@tree5347.json | 41afe4404263230be6f5a5017a1bce0de8b4324b |
| tree_ot_467@Tr86931.json | a78530993b0c91294c68a29ea09e9d39ef03a200 |
| tree_ot_436@Tr70613.json | a5ed0ab9dc89f90a0a5e327a452c7a9506757a4b |
| tree_pg_2697@tree6262.json | 714f951674243f0ed0a5e703ddee1f156f31762f |
| tree_pg_2481@tree5339.json | 21e5043e79a4fb7e3779b5dcd556179312318e40 |
| tree_ot_374@Tr61050.json | 98379cb317b5e565b7e04f058bdb93fd0b5518f5 |
| tree_ot_235@Tr50560.json | c8f7df0d1a7b41e4225ae9e29d8a3015268205a3 |
| tree_pg_2467@tree6025.json | 2d1acb777150b8db0d564abccc06ce0edf9eaa1a |
| tree_ot_344@Tr60495.json | 2f64add5803054a9ac9d0728b8af6f25a165d7fc |
| tree_ot_381@Tr62023.json | 80dc35bf77e5df58829d5ba4afca0b8402a2d47b |
| tree_pg_1288@tree2584.json | e7def8e1ec781ebf2be939ad5f004acfc34d15d8 |
| tree_pg_647@tree5621.json | 654b97048f4e0411f212f9cdac8e2c39b558e898 |
| tree_pg_1618@tree5896.json | 259375d3f57796980e5ca6c45ce4b37e989cf40b |
| tree_pg_1328@tree5855.json | 4dd8f18f34f5c6cc3b6e3cb8a58c8a71e103e4dc |
| tree_pg_2280@tree4827.json | d8a06a35554b367330b0e23ff71eb1935aea6d3b |
| tree_pg_1420@tree5303.json | 06a1e066cc162980bd4dd8e0e99a285a9e383ef3 |
| tree_pg_644@tree1127.json | ecde3d315e85f5698fd3a06b008b791386e3d9a4 |
| tree_pg_529@tree761.json | 1fd51a3837182f2d630491ad1a75443cfadfca5c |
| tree_pg_698@tree5648.json | e0a0563b86cbdb5d7589315dd0b85e73f7894b00 |
| tree_pg_516@tree728.json | 46ed2c164cddde94fdc9ca1545915a6a1d7effca |
| tree_pg_1052@tree5770.json | 8ad3e1914c61ae9f6999ed4ae41ed62782f4b912 |
| tree_pg_1608@tree5892.json | e15a9b59e9f9beccb4524855c45763fa112b8b5b |
| tree_pg_2518@tree5428.json | 5c52e1e63ba33ffc2c46833aaad3f05e4e15c410 |
| tree_pg_860@tree1654.json | e1d44350f0c3a335bb6326e76daaf9dfaa555053 |
| tree_pg_699@tree1258.json | 1c5c804a87c234d49e788ab3e3b1d816012a9ca9 |
| tree_pg_2276@tree4823.json | 00a85095eab4f7187251f6968ef35751fb411087 |
| tree_pg_857@tree1651.json | 1b6fb840f564d7d045182ae5689c7a09614f2214 |
| tree_pg_487@tree5599.json | 552fa4d7abd5286621146dd9cb1b37e095e70ad4 |
| tree_pg_492@tree664.json | d8d60e79b599ff5d609756a1ca5f2eefdb004440 |
| tree_pg_1032@tree1981.json | ee02f45348901e599dab850bcb7f9a2d8224bc53 |
| tree_pg_2314@tree4883.json | f42f6edf2d1fcdaaa6aacbc506772f68111b3e75 |
| tree_pg_467@tree5592.json | edb4108d4943ab668e3f5c6d6406682c06f361b7 |
| tree_pg_1631@tree3297.json | 253486c2af763d8b10cae3439091232ec0a2fe6e |
| tree_pg_2238@tree4729.json | f91824828a7fac6b104d259bfc069d91bd3e3afd |
| tree_pg_740@tree1346.json | 8c83f155fa4be1c30ec691dc5118b51590a2e50e |
| tree_ot_486@Tr2898.json | 618503a6dc21aedb20bd80557d6b3e86508fb8cf |
| tree_pg_463@tree604.json | e3e5d935b1d8eafebafed603a58079a08a6eafb6 |
| tree_pg_2468@tree5310.json | 039ebb5276629fe6e72affa730021741598d0f9f |
| tree_pg_674@tree1207.json | 1ea329db09131748eb8997339da9943b6c4d3ef0 |
| tree_pg_443@tree562.json | d2ad3336387391fd5b31997ace17fcc7b6a07c56 |
| tree_pg_2196@tree4650.json | 03fc0281c3f9386e635c0d2e2e6940afbb26d575 |
| tree_pg_2206@tree4667.json | 83029b28a1906a6bfb29603510e87224cc2cf734 |
| tree_pg_776@tree5653.json | dfc4adf5f133849af4bd76b78cde7223ff4fa8e6 |
| tree_pg_404@tree506.json | 96244f33ff3a3488f901202be554696e36eea687 |
| tree_pg_415@tree5572.json | b3642de4bb7482fd57d80048200faec1e1c75ca8 |
| tree_pg_2300@tree4862.json | 2729add575d371944f3ccacd13d0039a53a8e865 |
| tree_pg_1604@tree5891.json | d251422ebd7d6a44aaf6953bc8628763db334058 |
| tree_pg_388@tree469.json | 7689a87f84c4b187b3d21e1d0e6367652c797e2d |
| tree_pg_668@tree1193.json | a41e7fe2b345832948d85ba51aa357e2e2002584 |
| tree_pg_361@tree5551.json | a0664fe01c3e66c41d47507c8a3136d6299b599b |
| tree_pg_2263@tree4797.json | 638b28426918fa7427a26ad9d003f9743da2ddef |
| tree_pg_1165@tree2355.json | a77f0dcef6c5fcd5e8f5aabd5b1e4e21e1f1206a |
| tree_pg_340@tree5532.json | d5baf05d9e04bf02684d29b3a4215ac691f0084f |
| tree_pg_352@tree388.json | cb58dff6367909f0a771785e55f530ffa52addad |
| tree_pg_874@tree5717.json | 25ee81b02e4bca08397b72b102fce6c4aefdf2ac |
| tree_pg_2531@tree5449.json | 8c49868e43956c831e03fc4761cf884eba246218 |
| tree_pg_252@tree211.json | 490ba52da38cfd7308858e82605ec553895bc078 |
| tree_pg_733@tree1324.json | 6645f39f43070b0a067d9190d07896d34d77b5c5 |
| tree_pg_1718@tree3460.json | 192c702498ed15358fbf67bb57a3aa724dce59f3 |
| tree_pg_1719@tree3462.json | d293c54b2d70e5fae20383b7ecd0d3e2ec4aab0e |
| tree_pg_525@tree743.json | 5903f992560afd9b726347e7c6d9cc5089b27fee |
| tree_pg_961@tree5754.json | 7d8ac7cf675ba505f012b3eb4b23bba5c9f54142 |
| tree_pg_1177@tree5811.json | 5d247a07f076941728609781e17cfce0de6349b3 |
| tree_pg_1758@tree5940.json | 6538b9df24a75f86f20045ca02dad6dbebbce017 |
| tree_pg_2290@tree4850.json | 3b2372c9eef592e0fd608e288a2b47b8572481da |
| tree_pg_1757@tree3539.json | 3edc6800da220d6533f631e1645bd600134f5db4 |
| tree_pg_1691@tree3407.json | 45560ccffc334ee7796e38b5b84ca37ab14afdb0 |
| tree_pg_1727@tree3475.json | 87f809eaf63edc19ff7739c2eb46e7bad52b0bce |
| tree_pg_2222@tree4697.json | 153f64e1b97e6db2dc24c0d944fb32fc98e39dab |
| tree_pg_1666@tree5901.json | 7f63e2fae6b9a7c3eca0a15e707a82432848b2b0 |
| tree_pg_1669@tree5902.json | 4eb5d879961ead9030e33c3c642e0e51ba23e1d0 |
| tree_pg_1678@tree3382.json | b704b0922473f0ed6cf0c74b9d2284f515f61904 |
| tree_pg_1667@tree3362.json | a71ac6e231314eae0a172528bb8ff57c73932642 |
| tree_pg_1609@tree3245.json | 7aa201c6da0e4859ade9167d739a38ca9bbe6b92 |
| tree_ot_353@Tr55240.json | be7e36142740f4c5c4482d088285902c1f6b1ab8 |
| tree_pg_1617@tree3261.json | 47c23c7d97cc859a64e40ca016f82254d8b49485 |
| tree_pg_1708@tree3445.json | 1d1f4d13f3bbc601511528947f55210f8cd1dcc2 |
| tree_pg_883@tree1703.json | dfd310a275bc075577c3dd27c2d9fd6f693a8eab |
| tree_ot_526@Tr91777.json | ccee7b627126724dc644256bf0f154d001923a4e |
| tree_ot_575@tree3.json | 5a1bdf0a370cc0253d0f66da2cce2c7ebd379f44 |
| tree_ot_591@Tr53870.json | 8477176f2e61c5eb9760148b012bb11e5e677699 |
| tree_ot_594@tree1.json | 91ee7fbafbe688001c77908302fb871ec55f39d2 |
| tree_ot_589@tree1.json | 09b27e724d19148e5d0cb6725d3dd8f29029524a |
| tree_ot_590@tree1.json | 976722fc8d6721c0270dfcfa076202448613eff0 |
| tree_ot_595@Tr53782.json | 7a4a6a9150abc0734aaff1b8f38f6b6e860da4c9 |
| tree_ot_599@Tr53933.json | 796a0dc4a3ccfc35b754030a18d0d1dc09958677 |
| tree_ot_625@Tr53737.json | f630ec08f76d54dfa3ea35f7224f9189ed3cbe63 |
| tree_ot_633@tree2.json | edbe1acf98cbd5ec81fa7e9c240e37bb146d600a |
| tree_ot_631@tree1.json | abdf46387dec27d383f12a816f1ae93c29a6e06b |
| tree_ot_635@tree1.json | 9dc97c78c70b87edcd75466faa44cdd3c0f1f602 |
| tree_ot_627@tree1.json | 6b07054cad32992d519debc6c64eece88dd7ad48 |
| tree_ot_645@tree1.json | beee02b4ed9696b7db9e702a818e6027d033b058 |
| tree_ot_651@tree2.json | 2a9a0c6f977dcb38444617445d743f77511bd866 |
| tree_pg_2919@tree6749.json | 66c6fc39a44629fbb0403d081d6c6f15385bbdab |
| tree_ot_619@tree8.json | ea2f999f7074a382088716340fcd7c39f5029de7 |
| tree_ot_75@tree1.json | 4bd273c58f0b40665040413a5424135fd49b0b19 |
| tree_ot_98@tree1.json | dad3ed5fc965ba13ef443a426f3a5d64acbfeef8 |
| tree_ot_632@tree2.json | a57b26019184b806ee0a976620d058dedbfefcda |
| tree_ot_620@tree1.json | 0eaf91da2cba7df73acd444cbf8873215dc7c360 |
| tree_ot_163@tree1.json | a729b1c921070f3ce4947f2dc3231be2f0c331fe |
| tree_ot_644@tree1.json | 68f111417058fb37ab4b6c4a0768b539780d176c |
| tree_ot_640@tree1.json | aaf676fef389d5b1b8ad59410fd20a2c463c3b75 |
| tree_ot_643@tree1.json | 91cf5f70362e9e679c873c0a27b57e4e3fe5b50a |
| tree_pg_2921@tree6749.json | a4e47763e606be9872f3529a89beab8e93e16cd0 |
| tree_pg_2923@tree6751.json | 1576b6fee8d3c6ed24a88686f19bfe44f6138236 |
| tree_ot_646@tree1.json | 457a0f50f6fe7f8ce1d972a2c548fe467c1aeb91 |
| tree_ot_71@tree1.json | fae37e4234b05ae6d9e2efddf3d3ff9100436680 |
| tree_pg_2922@tree6752.json | fd53787c8db2e2eb69c2e57c08b044ccbf2befb3 |
| tree_ot_618@tree1.json | 1d1dd7f358b40fa02eaec801283208f4b478d205 |
| tree_ot_634@tree1.json | a00f8d05b16b38b0c49c9e07312d25a798bf0970 |
| tree_pg_2918@tree6755.json | 0b4a2e340c519cc4fc7e2197d873dcba2dab8d3c |
| tree_ot_652@tree4.json | 87cba0c5927c15d46e95b0273de2db15c0d5f759 |
| tree_ot_74@tree1.json | 7180211933c34894ad9b7fa59aac14a5bc46ea6f |
| tree_ot_639@tree1.json | 6c7556690b811a190a4f089ad7918c1923288007 |
| tree_ot_615@Tr76459.json | 8d74a69c2cd6f85fa65ca539950c28e0dac61eeb |
| tree_pg_2917@tree6745.json | 1755f3ce4c9da3304845bf11fbe1172da08e9edd |
| tree_pg_2842@tree6603.json | abe759e4af2d1842aa7ab4a88f64ea4431956809 |
| tree_ot_813@tree1.json | 50c39159632d5ef042fe1608664be74ca537d02b |
| tree_ot_1003@Tr100305.json | 79272b70cce174335d317a6dcea34ab22f33321c |
| tree_pg_2827@tree6577.json | d4c835ca1e2d84cf0bf1fba4ce5dabac7cc771a3 |
| tree_pg_761@tree1415.json | b1c9a4cbc350b6784408866da3e7b03b25df3993 |
| tree_pg_77@tree5878.json | d113a80ea69f2c1ec147964a2585948519a28569 |
| tree_pg_754@tree1392.json | 5ef6506889e952c051cdf56273b677ea9df3ee3a |
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