otc-degree-distribution ../opentree5.0/cleaned_ott/cleaned_ott.tre > ../opentree5.0/assessments/taxonomy_degree_distribution.txt otc-degree-distribution \ ../opentree5.0/labelled_supertree/labelled_supertree.tre \ > ../opentree5.0/assessments/supertree_degree_distribution.txt otc-taxonomy-parser \ $(./bin/config_checker.py --config=../opentree5.0/config --property=opentree.ott) \ --report-lost-taxa \ ../opentree5.0/labelled_supertree/labelled_supertree.tre \ -c ../opentree5.0/config > ../opentree5.0/assessments/.lost_taxa.txt \ || rm ../opentree5.0/assessments/.lost_taxa.txt mv ../opentree5.0/assessments/.lost_taxa.txt ../opentree5.0/assessments/lost_taxa.txt ./bin/run_assessments.py ../opentree5.0 ../opentree5.0/assessments/summary.json 2>&1 | tee ../opentree5.0/assessments/log.txt || true