Propinquity output documentation. The top-level docs are here.

This directory copies of the NexSON files for each tree that is a phylogenetic input.

The next step in processing the phylogenetic inputs is the removal of nodes because of problems associated with the mapping of OTUs to the OTTaxonomy. See ../cleaned_phylo/index.html for details about that step.

concrete_rank_collection.json is a version of ../phylo_input/rank_collection.json with git SHAs filled in. Rerunning the pipeline with this collection should yield the same inputs.
collections_git_shas.txt holds a list of the SHAs for the HEADs of each collection shard of the phylesystem at the time the supertree operation was run.In the case of this run:
- a76e140b29db99c62bbb12bbb07c7778279dacef
git_shas.txt holds a list of the SHAs for the HEADs of each shard of the phylesystem at the time that the supertree operation was run. In the case of this run:
- e262908a364e3b73ba5e8996fceba51e6997167a
The 511 NexSON files stored are: